suba logo
AT3G54210.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein L17 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L17 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L17 (InterPro:IPR000456); BEST Arabidopsis thaliana protein match is: Ribosomal protein L17 family protein (TAIR:AT5G09770.1); Has 8019 Blast hits to 8019 proteins in 2737 species: Archae - 0; Bacteria - 5501; Metazoa - 121; Fungi - 128; Plants - 120; Viruses - 0; Other Eukaryotes - 2149 (source: NCBI BLink).
Protein Annotations
BioGrid:9905eggNOG:COG0203eggNOG:KOG3280EMBL:AF375425EMBL:AL132957EMBL:AY086449EMBL:AY124804
EMBL:AY136290EMBL:BT000413EMBL:CP002686EnsemblPlants:AT3G54210EnsemblPlants:AT3G54210.1entrez:824588Gene3D:3.90.1030.10
GeneID:824588Genevisible:Q9M385GO:GO:0003735GO:GO:0005840GO:GO:0006412GO:GO:0009507GO:GO:0009570
GO:GO:0009941GO:GO:0019843Gramene:AT3G54210.1HAMAP:MF_01368hmmpanther:PTHR14413HOGENOM:HOG000019780InParanoid:Q9M385
InterPro:IPR000456KEGG:ath:AT3G54210KO:K02879OMA:FEHNFTIPANTHER:PTHR14413PaxDb:Q9M385Pfam:PF01196
Pfam:Q9M385PhylomeDB:Q9M385PIR:T47580PRIDE:Q9M385PRO:PR:Q9M385ProteinModelPortal:Q9M385Proteomes:UP000006548
RefSeq:NP_190989.1SMR:Q9M385STRING:3702.AT3G54210.1SUPFAM:SSF64263TAIR:AT3G54210TIGRfam:TIGR00059TIGRFAMs:TIGR00059
UniGene:At.27695UniProt:Q9M385
Coordinates (TAIR10) chr3:-:20067672..20068385
Molecular Weight (calculated) 23482.90 Da
IEP (calculated) 11.91
GRAVY (calculated) -0.33
Length 211 amino acids
Sequence (TAIR10)
(BLAST)
001: MAIPMSMAMA TPTDSVSRVW SMSSLKSALP STASLRLPSS SSRRPVTLRL PISSPSLPSF SGLSPVNPLL SIGLPDWQSF ENGFKIVDGG GRIYAMRHGR
101: RVPKLNRPPD QRKALLRGLT TQLLKHGRIK TTRARASAMR KFVDKMITLA KDGSLHKRRQ ALGYIYEKQI VHALFAEVPD RYGERNGGYT RIIRTLPRRG
201: DNAPMAYIEL V
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)