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AT3G54200.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to plasma membrane, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT3G05975.1); Has 631 Blast hits to 630 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 631; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J10CeggNOG:ENOG4111VEEEMBL:AK229134EMBL:AL132957EMBL:CP002686EnsemblPlants:AT3G54200EnsemblPlants:AT3G54200.1
entrez:824587GeneID:824587GO:GO:0005886GO:GO:0009506GO:GO:0016021GO:GO:0046658Gramene:AT3G54200.1
hmmpanther:PTHR31852hmmpanther:PTHR31852:SF43InterPro:IPR004864KEGG:ath:AT3G54200OMA:HCKYSTKPfam:PF03168PhylomeDB:Q9M386
PIR:T47579Proteomes:UP000006548RefSeq:NP_190988.1STRING:3702.AT3G54200.1SUPFAM:0051044SwissPalm:Q9M386TAIR:AT3G54200
TMHMM:TMhelixUniGene:At.27525UniProt:Q9M386
Coordinates (TAIR10) chr3:+:20065731..20066438
Molecular Weight (calculated) 25786.00 Da
IEP (calculated) 10.48
GRAVY (calculated) 0.11
Length 235 amino acids
Sequence (TAIR10)
(BLAST)
001: MSDFSIKPDD KKEEEKPATA MLPPPKPNAS SMETQSANTG TAKKLRRKRN CKICICFTIL LILLIAIVIV ILAFTLFKPK RPTTTIDSVT VDRLQASVNP
101: LLLKVLLNLT LNVDLSLKNP NRIGFSYDSS SALLNYRGQV IGEAPLPANR IAARKTVPLN ITLTLMADRL LSETQLLSDV MAGVIPLNTF VKVTGKVTVL
201: KIFKIKVQSS SSCDLSISVS DRNVTSQHCK YSTKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)