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AT3G54100.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.512
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : O-fucosyltransferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
O-fucosyltransferase family protein; CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378); BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT2G37980.1); Has 847 Blast hits to 824 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 847; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKBIeggNOG:ENOG410YKDZEMBL:AL132957EMBL:CP002686EnsemblPlants:AT3G54100EnsemblPlants:AT3G54100.1entrez:824577
GeneID:824577GO:GO:0016021GO:GO:0016757Gramene:AT3G54100.1hmmpanther:PTHR31741hmmpanther:PTHR31741:SF4HOGENOM:HOG000240134
InterPro:IPR019378KEGG:00514+2.4.1.221KEGG:ath:AT3G54100OMA:STGSHYHPfam:PF10250PhylomeDB:Q9M393PIR:T47569
Proteomes:UP000006548RefSeq:NP_190978.1STRING:3702.AT3G54100.1TAIR:AT3G54100TMHMM:TMhelixUniGene:At.35137unipathway:UPA00378
UniProt:Q9M393
Coordinates (TAIR10) chr3:-:20034451..20037874
Molecular Weight (calculated) 72911.20 Da
IEP (calculated) 9.25
GRAVY (calculated) -0.42
Length 638 amino acids
Sequence (TAIR10)
(BLAST)
001: MSVVGAINPV PIAPTTRRRV GDSLDVISER PSNSSDYCNT INQPIVGSTD LDGGDATGQD SSPSSESSAS STGSHYHHDH YHRFYSHPVI RYLLLRKFWI
101: PFYGGASTVV IGQGFRSGRN VGRRILGLLM LLVVASVFLR VYLMGGVRVV DHARLKEFVV VRTLRDDWSM AQREVAENQA SSQPMRVLEK LPIPEIWQKP
201: ESGNYRQCVT RPKNYTRLQR QTNGYLVVHA NGGLNQMRTG ICDMVAVAKI MNATLVLPLL DHESFWTDPS TFKDIFDWRN FMNVLKHDVD IVEYLPPQYA
301: AMKPLLKAPV SWSKASYYRS EMLPLLKRHK VLKFTLTDSR LANNGLPPSI QRLRCRANYQ ALLYTKEIED LGKILVNRLR NNTEPYIALH LRYEKDMLAF
401: TGCNHNLTTE EAEELRIMRY SVKHWKEKEI DSRERRIQGG CPMSPREAAI FLKAMGYPSS TTVYIVAGEI YGSESMDAFR AEYPNVFSHS TLATEEELEP
501: FSQYQNRLAA LDYIVALESD VFVYTYDGNM AKAVQGHRKF EGFRKSINPD RLNFVRLIDH FDEGIISWEE FSSEVKRLNR DRIGAAYGRL PAALPRLEEN
601: FYANPQPDCI CNKSHPEQLR KQSSLRTDSK SWKKSALR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)