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AT3G54080.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.739
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Concanavalin A-like lectin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Concanavalin A-like lectin family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: Concanavalin A-like lectin family protein (TAIR:AT5G01090.1); Has 189 Blast hits to 188 proteins in 20 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 187; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JXDKeggNOG:ENOG411042EEMBL:AF370199EMBL:AL132957
EMBL:AY113933EMBL:CP002686EnsemblPlants:AT3G54080EnsemblPlants:AT3G54080.1
entrez:824575Gene3D:2.60.120.200GeneID:824575GO:GO:0016021
GO:GO:0030246Gramene:AT3G54080.1hmmpanther:PTHR11795hmmpanther:PTHR11795:SF403
HOGENOM:HOG000153244InterPro:IPR001220InterPro:IPR013320KEGG:ath:AT3G54080
ncoils:CoilOMA:KRNNLAMPfam:PF00139PhylomeDB:Q9M395
PIR:T47567Proteomes:UP000006548RefSeq:NP_190976.1SMR:Q9M395
SUPFAM:SSF49899TAIR:AT3G54080TMHMM:TMhelixUniGene:At.72888
UniGene:At.922UniProt:Q9M395
Coordinates (TAIR10) chr3:+:20025397..20026449
Molecular Weight (calculated) 39555.20 Da
IEP (calculated) 5.73
GRAVY (calculated) -0.12
Length 350 amino acids
Sequence (TAIR10)
(BLAST)
001: MASFILSRSL LVLLLSLTAL LSSISISEAT SSFSFTSSGK NASFESEDFA LYGDAKLVDG GSSIQLTDSV SHGGGRVIYK KPIESMNNIK FEYFTGFSTF
101: FSFSISPSRG GRLGFVVFPV NETFDHSLFQ VKFDTFDSFT QIGDSNVAVI VDGATVSERI RNFTIANLEK TEKVLLYAWI NYQAGGKFLE VRLSKSKSFE
201: SVLPLMFDQI DLSQMLRDED EFMVAVNSYS GNVNLHSWSL EVRHSEYEHS WAPVLLEEQL RKEEQLRKEE AAKKRTSDRM WEVVTCFVMT FGSTGLVFFA
301: MMHIYAAFKR NNLAMVMQEE CGIKTKEFGY KKMEKMEVVT SNADAKQERK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)