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AT3G54010.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : FKBP-type peptidyl-prolyl cis-trans isomerase family protein
Curator
Summary (TAIR10)
Immunophilin-like protein similar to the p59 FK506-binding protein (FKBP52). Shows rotamase activity and contains an FKBP-like domain and three tetratricopeptide repeat units. Members of this class of mutation show ectopic cell proliferation in cotyledons. Gene may be alternatively spliced.
Computational
Description (TAIR10)
PASTICCINO 1 (PAS1); FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity, binding; INVOLVED IN: in 9 processes; LOCATED IN: endoplasmic reticulum, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734), Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: rotamase FKBP 1 (TAIR:AT3G25230.2); Has 6940 Blast hits to 5854 proteins in 534 species: Archae - 36; Bacteria - 500; Metazoa - 3344; Fungi - 737; Plants - 1066; Viruses - 0; Other Eukaryotes - 1257 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G54010-MONOMERBioCyc:ARA:GQT-2603-MONOMERBioGrid:9885EC:5.2.1.8eggNOG:COG0545eggNOG:KOG0543EMBL:AL132960
EMBL:AY056265EMBL:AY096635EMBL:CP002686EMBL:U77365EMBL:U77366EnsemblPlants:AT3G54010EnsemblPlants:AT3G54010.1
entrez:824568Gene3D:1.25.40.10GeneID:824568Genevisible:Q7DMA9GO:GO:0000413GO:GO:0003755GO:GO:0005528
GO:GO:0005634GO:GO:0005783GO:GO:0005789GO:GO:0005829GO:GO:0009734GO:GO:0009735GO:GO:0009736
GO:GO:0009793GO:GO:0009826GO:GO:0009880GO:GO:0016021GO:GO:0030010GO:GO:0030154GO:GO:0042761
GO:GO:0048364GO:GO:0048527GO:GO:0061077hmmpanther:PTHR10516hmmpanther:PTHR10516:SF268HOGENOM:HOG000030302InParanoid:Q7DMA9
IntAct:Q7DMA9InterPro:IPR001179InterPro:IPR011990InterPro:IPR013026InterPro:IPR019734InterPro:IPR023566InterPro:IPR031135
KEGG:ath:AT3G54010MINT:MINT-8065524OMA:YDKFPRLPANTHER:PTHR10516PANTHER:PTHR10516:SF268PaxDb:Q7DMA9Pfam:PF00254
Pfam:PF00515Pfam:PF13174Pfam:PF13414Pfam:Q7DMA9Pfscan:PS50005Pfscan:PS50059Pfscan:PS50293
PhylomeDB:Q7DMA9PIR:T45941PRIDE:Q7DMA9PRO:PR:Q7DMA9PROSITE:PS50005PROSITE:PS50059PROSITE:PS50293
ProteinModelPortal:Q7DMA9Proteomes:UP000006548RefSeq:NP_566993.1RefSeq:NP_850701.1SMART:SM00028SMR:Q7DMA9STRING:3702.AT3G54010.1
SUPFAM:SSF48452SUPFAM:SSF54534TAIR:AT3G54010tair10-symbols:DEI1tair10-symbols:PAS1TMHMM:TMhelixUniGene:At.10785
UniProt:Q7DMA9
Coordinates (TAIR10) chr3:+:20001042..20005063
Molecular Weight (calculated) 71800.80 Da
IEP (calculated) 5.12
GRAVY (calculated) -0.55
Length 635 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVGDQTEQN YLPKKKKSET EDDKRRKKIV PGSLLKAVVR PGGGDSSPVD GDQVIYHCTV RTLDGVVVES TRSESGGRGV PIRDVLGNSK MILGLLEGIP
101: TMHKGEIAMF KMKPEMHYAE IDCPVSAPEN FPKDDELHFE IELLDFSKAK IASDDLGVIK KILNEGEGWE SPREPYEVKA RISAKSGDGH VIFSHTEEPY
201: FFTFGKSEVP KGLEIGIGTM ARKEKAVIYV RKQYLTESPL LHIDQDLEEV HFEVELVHFI QVRDMLGDGR LIKRRIRDGR GEFPMDCPLQ DSRLSVHYKG
301: MLLNEEKTVF YDSKIDNNDQ PLEFSSGEGL VPEGFEMCTR LMLPGEIALV TCPPDYAYDK FPRPPGVSEG AHVQWEIELL GFETPRDWTG LNFQSIMDEA
401: DKIRSTGNRL FKEGKFELAK AKYEKVLREF NHVNPQDEDE GKIFGDTRNM LHLNVAACLL KMGEWRKSIE TCNKVLEAKP GHVKGLYRRG MAYIAGGEYD
501: DARNDFNMMI KVDKSSEADA TAALLKLKQK EQEAESKARK QFKGLFDKRP GEITEVGSEI REESKTIEEV DETKDNDDDE TLEEEGATTV STERKRKWSE
601: KAWPFLKNVM LQIGIQLGVV LIGILIFQFV SAKFT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)