suba logo
AT3G53950.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 0.988
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glyoxal oxidase-related protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
glyoxal oxidase-related protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Galactose oxidase, beta-propeller (InterPro:IPR015916), Immunoglobulin E-set (InterPro:IPR014756), Glyoxal oxidase, N-terminal (InterPro:IPR009880), Domain of unknown function DUF1929 (InterPro:IPR015202); BEST Arabidopsis thaliana protein match is: glyoxal oxidase-related protein (TAIR:AT1G75620.1); Has 849 Blast hits to 839 proteins in 169 species: Archae - 0; Bacteria - 325; Metazoa - 1; Fungi - 246; Plants - 262; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJ2ZeggNOG:ENOG41110V0EMBL:AK117130EMBL:AL132960
EMBL:AY054205EMBL:BT002692EMBL:CP002686EnsemblPlants:AT3G53950
EnsemblPlants:AT3G53950.1entrez:824562Gene3D:2.130.10.80Gene3D:2.60.40.10
GeneID:824562GO:GO:0016021Gramene:AT3G53950.1hmmpanther:PTHR32208
hmmpanther:PTHR32208:SF8HOGENOM:HOG000239926InterPro:IPR009880InterPro:IPR011043
InterPro:IPR013783InterPro:IPR014756InterPro:IPR015202InterPro:IPR015916
KEGG:ath:AT3G53950OMA:RWIRIVSPfam:PF07250Pfam:PF09118
PhylomeDB:Q9M332PIR:T45935Proteomes:UP000006548RefSeq:NP_190963.1
SMR:Q9M332STRING:3702.AT3G53950.1SUPFAM:0047741SUPFAM:SSF50965
SUPFAM:SSF81296TAIR:AT3G53950TMHMM:TMhelixUniGene:At.1408
UniProt:Q9M332
Coordinates (TAIR10) chr3:+:19975704..19977341
Molecular Weight (calculated) 60007.80 Da
IEP (calculated) 5.31
GRAVY (calculated) -0.11
Length 545 amino acids
Sequence (TAIR10)
(BLAST)
001: MAELIPWYYT SGSGIVLVLQ TIFLFSIVRA DLPGSWELIV QDAGIASMHT AVTRFNTVIL LDRTNIGPSR KALDRHRCRR DPKDAALKRD CYAHSVLFDL
101: GTNQIRPLMI QTDTWCSSGQ FLSDGSLLQT GGDKDGFKKI RKFEPCDPNE TCDWVELQDT ELITGRWYAS NQILPDGSVI IVGGRGTNTV EYYPPRENGA
201: VPFQFLADVE DKQMDNLYPY VHLLPDDDGG NLFIFANSRA VKYDHRINAV VKEYPPLDGG PRNYPSGGSS AMLAIQGDFT TAEILICGGA QSGAFTARAI
301: DAPAHGTCGR IVATAADPVW VTEEMPFGRI MGDMVNLPTG EILIINGAQA GSQGFEMGSD PCLYPLLYRP DQPIGLRFMT LNPGTVPRMY HSTANLLPDG
401: RILLAGSNPH YFYKFNAEFP TELRIEAFSP EYLSPDRANL RPEIQEIPQI IRYGEVFDVF VTVPLPVVGI IQMNWGSAPF ATHSFSQGQR LVKLTVAPSV
501: PDGVGRYRIQ CTAPPNGAVS PPGYYMAFAV NQGVPSIARW IRIVS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)