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AT3G53940.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
peroxisome 0.991
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Mitochondrial substrate carrier family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Mitochondrial substrate carrier family protein; FUNCTIONS IN: binding, transporter activity; INVOLVED IN: transport, mitochondrial transport, transmembrane transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: Mitochondrial substrate carrier family protein (TAIR:AT2G37890.1); Has 31235 Blast hits to 14563 proteins in 465 species: Archae - 0; Bacteria - 2; Metazoa - 13401; Fungi - 9616; Plants - 4899; Viruses - 2; Other Eukaryotes - 3315 (source: NCBI BLink).
Protein Annotations
DNASU:824561eggNOG:ENOG410ZRF1eggNOG:KOG0752EMBL:AY062478EMBL:AY093262EMBL:CP002686EnsemblPlants:AT3G53940
EnsemblPlants:AT3G53940.1entrez:824561Gene3D:1.50.40.10GeneID:824561GO:GO:0016021GO:GO:0055085Gramene:AT3G53940.1
hmmpanther:PTHR24089hmmpanther:PTHR24089:SF307HOGENOM:HOG000165726InterPro:IPR002067InterPro:IPR018108InterPro:IPR023395KEGG:ath:AT3G53940
OMA:IHAENAGPfam:PF00153Pfscan:PS50920PhylomeDB:Q8W4M2PRINTS:PR00926PROSITE:PS50920Proteomes:UP000006548
RefSeq:NP_190962.2SMR:Q8W4M2SUPFAM:0048588SUPFAM:SSF103506TAIR:AT3G53940UniGene:At.27329UniProt:Q8W4M2
Coordinates (TAIR10) chr3:-:19971258..19973564
Molecular Weight (calculated) 39763.80 Da
IEP (calculated) 10.00
GRAVY (calculated) -0.07
Length 365 amino acids
Sequence (TAIR10)
(BLAST)
001: MEARVGVVVE GGQRALNTAT TTAVHNTVVD AGNRKLLQQQ PQTQQTQSCH QHHQSNKQSL NQQQGHFGTV ERLLAGGIAG AFSKTCTAPL ARLTILFQIQ
101: GMQSEAAILS SPNIWHEASR IVKEEGFRAF WKGNLVTVAH RLPYGAVNFY AYEEYKTFLH SNPVLQSYKG NAGVDISVHF VSGGLAGLTA ASATYPLDLV
201: RTRLSAQRNS IYYQGVGHAF RTICREEGIL GLYKGLGATL LGVGPSLAIS FAAYETFKTF WLSHRPNDSN AVVSLGCGSL SGIVSSTATF PLDLVRRRMQ
301: LEGAGGRARV YTTGLFGTFK HIFKTEGMRG LYRGIIPEYY KVVPGVGIAF MTFEELKKLL STVPN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)