AT3G53930.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Protein kinase superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, putative (InterPro:IPR020655), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT2G37840.1); Has 133618 Blast hits to 130974 proteins in 4578 species: Archae - 156; Bacteria - 15164; Metazoa - 49715; Fungi - 13328; Plants - 32750; Viruses - 546; Other Eukaryotes - 21959 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:19966541..19970580 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 78802.90 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.39 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 711 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAQSSLVAAA GRSGRVIGDY AVGRQIGSGS FSVVWEGRHL VHGTVVAIKE IAMARLNKKL QESLMSEIII LRKINHPNII RFIDMIEAPG KINLVLEYCK 101: GGDLSMYIHK HGSVPEATAK HFMLQLAAGL QVLRDNNIIH RDLKPQNLLL STDDNDAALK IADFGFARSL QPRGLAETLC GSPLYMAPEI MQLQKYDAKA 201: DLWSVGAILF QLVTGRTPFT GNSQIQLLQN IIRSTELHFP ADCRDLSTDC KDLCQKLLRR NPVERLTFEE FFHHPFLSDK QSYDFTRSRL DSRTMNDFHS 301: SGSSPSRNIE EISQEDGLPF FLDDDSSGPE GSPSSFKHTS PMKSSYGFSV ERREAALSPL KNMDLSSRYS RVSHRAETNN FKFEGHRLSD RSQFKPSSLP 401: DSRSFSTQGR GDSPDSMDQD YVLISGPPVD IPSSSSGSPK PFNYPFKSHS PPVEFIKRNV TNLTAPMPIA SATGNNLSRF GSLESQNCIP GTSHGSLDLV 501: DAFEQPSTNS LTRIRSLQKC AAAIAELVHE RGENGKHLEA FSIQLVILAI WNQALHICHT QAVSGIEGSL LQDINRVGRN ISHGGSEKLL PQIQKEFVQE 601: VERAEELAKF VESDNAKMPD AMEMILQAAL ALGISGGVDE VMGDAENAGN LYSKAVRLLV FLAVEAQTLI LNPPLTLTNS VRYRLRTYID SLITRLKHLQ 701: SHRRTSYPQK Q |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)