suba logo
AT3G53900.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:21166475 (2011): cytosol
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : uracil phosphoribosyltransferase
Curator
Summary (TAIR10)
Encodes UPP, a plastidial uracil phosphoribosyltransferase (UPRT) involved in uracil salvage. Loss-of-function mutation causes dramatic growth retardation, a pale-green to albino phenotype, abnormal root morphology and chloroplastic disorders.
Computational
Description (TAIR10)
uracil phosphoribosyltransferase (UPP); FUNCTIONS IN: uracil phosphoribosyltransferase activity; INVOLVED IN: cellular response to phosphate starvation, developmental process, nucleoside metabolic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribosyltransferase (InterPro:IPR000836), Uracil phosphoribosyl transferase (InterPro:IPR005765); BEST Arabidopsis thaliana protein match is: uridine kinase-like 2 (TAIR:AT3G27190.1); Has 6281 Blast hits to 6281 proteins in 2387 species: Archae - 194; Bacteria - 4412; Metazoa - 236; Fungi - 342; Plants - 200; Viruses - 0; Other Eukaryotes - 897 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT3G53900EnsemblPlants:AT3G53900.1entrez:824557gramene_pathway:2.4.2.9gramene_pathway:PWYQT-4445hmmpanther:PTHR10285hmmpanther:PTHR10285:SF77
KEGG:00240+2.4.2.9Pfam:PF14681tair10-symbols:PYRRtair10-symbols:UPPTIGRfam:TIGR01091unipathway:UPA00574
Coordinates (TAIR10) chr3:-:19956914..19958699
Molecular Weight (calculated) 25162.80 Da
IEP (calculated) 6.80
GRAVY (calculated) 0.13
Length 231 amino acids
Sequence (TAIR10)
(BLAST)
001: MAASEASING SNRMLVFVPP HPLIKHWISV LRNEQTPCPV FRNAIAELGR LLMYEASREW LPTVVGEIMS PMGPASVEFI DPREPIAVVP ILRAGLALAE
101: HASSVLPANK IYHLGVSRDE KTLLPSVYLN KLPDEFPKNS RVFLVDPVLA TGGTIMAAMD LLKERGLSVQ QIKVICAIAA PPALSKLNEK FPGLHVYAGI
201: IDPEVNEKGY IIPGLGDAGD RSFGTETHWV K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)