AT3G53900.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : uracil phosphoribosyltransferase | ||||||||||||||||
| Curator Summary (TAIR10) |
Encodes UPP, a plastidial uracil phosphoribosyltransferase (UPRT) involved in uracil salvage. Loss-of-function mutation causes dramatic growth retardation, a pale-green to albino phenotype, abnormal root morphology and chloroplastic disorders. | ||||||||||||||||
| Computational Description (TAIR10) |
uracil phosphoribosyltransferase (UPP); FUNCTIONS IN: uracil phosphoribosyltransferase activity; INVOLVED IN: cellular response to phosphate starvation, developmental process, nucleoside metabolic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribosyltransferase (InterPro:IPR000836), Uracil phosphoribosyl transferase (InterPro:IPR005765); BEST Arabidopsis thaliana protein match is: uridine kinase-like 2 (TAIR:AT3G27190.1); Has 6281 Blast hits to 6281 proteins in 2387 species: Archae - 194; Bacteria - 4412; Metazoa - 236; Fungi - 342; Plants - 200; Viruses - 0; Other Eukaryotes - 897 (source: NCBI BLink). | ||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:19956914..19958699 | ||||||||||||||||
| Molecular Weight (calculated) | 25162.80 Da | ||||||||||||||||
| IEP (calculated) | 6.80 | ||||||||||||||||
| GRAVY (calculated) | 0.13 | ||||||||||||||||
| Length | 231 amino acids | ||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAASEASING SNRMLVFVPP HPLIKHWISV LRNEQTPCPV FRNAIAELGR LLMYEASREW LPTVVGEIMS PMGPASVEFI DPREPIAVVP ILRAGLALAE 101: HASSVLPANK IYHLGVSRDE KTLLPSVYLN KLPDEFPKNS RVFLVDPVLA TGGTIMAAMD LLKERGLSVQ QIKVICAIAA PPALSKLNEK FPGLHVYAGI 201: IDPEVNEKGY IIPGLGDAGD RSFGTETHWV K |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)