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AT3G53890.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:22550958 (2012): plastid
  • PMID:15734919 (2005): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ribosomal protein S21e
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein S21e ; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S21e (InterPro:IPR001931), Ribosomal protein S21e, conserved site (InterPro:IPR018279); BEST Arabidopsis thaliana protein match is: Ribosomal protein S21e (TAIR:AT5G27700.1); Has 661 Blast hits to 661 proteins in 257 species: Archae - 0; Bacteria - 0; Metazoa - 294; Fungi - 137; Plants - 120; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).
Protein Annotations
BioGrid:9873eggNOG:ENOG4112266eggNOG:KOG3486EMBL:AL132960
EMBL:AY065200EMBL:AY081547EMBL:CP002686EnsemblPlants:AT3G53890
EnsemblPlants:AT3G53890.1EnsemblPlants:AT3G53890.2entrez:824556GeneID:824556
Genevisible:Q9M337GO:GO:0003735GO:GO:0006412GO:GO:0022626
GO:GO:0022627Gramene:AT3G53890.1Gramene:AT3G53890.2hmmpanther:PTHR10442
HOGENOM:HOG000183557InParanoid:Q9M337IntAct:Q9M337InterPro:IPR001931
InterPro:IPR018279KEGG:ath:AT3G53890KO:K02971OMA:TRYAICG
PANTHER:PTHR10442PaxDb:Q9M337Pfam:PF01249Pfam:Q9M337
PhylomeDB:Q9M337PIR:T45929PIRSF:PIRSF002148PRIDE:Q9M337
PRO:PR:Q9M337ProDom:PD006584PROSITE:PS00996ProteinModelPortal:Q9M337
Proteomes:UP000006548Reactome:R-ATH-156827Reactome:R-ATH-1799339Reactome:R-ATH-72689
Reactome:R-ATH-72695Reactome:R-ATH-72702Reactome:R-ATH-72706Reactome:R-ATH-975956
Reactome:R-ATH-975957RefSeq:NP_001078280.1RefSeq:NP_190957.1scanprosite:PS00996
SMR:Q9M337STRING:3702.AT3G53890.1TAIR:AT3G53890UniGene:At.1404
UniProt:Q9M337
Coordinates (TAIR10) chr3:-:19955582..19956049
Molecular Weight (calculated) 9074.71 Da
IEP (calculated) 8.23
GRAVY (calculated) -0.54
Length 82 amino acids
Sequence (TAIR10)
(BLAST)
1: MENDAGQVTE LYIPRKCSAT NRMITSKDHA SVQLNIGHLD ANGLYTGQFT TFALCGFVRA QGDADSGVDR LWQKKKVEAK QQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)