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AT3G53740.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:22215637 (2012): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:17934214 (2008): cytosol
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15821981 (2005): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein L36e family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L36e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, ribosome, cytosolic large ribosomal subunit, plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L36e (InterPro:IPR000509); BEST Arabidopsis thaliana protein match is: Ribosomal protein L36e family protein (TAIR:AT2G37600.2); Has 732 Blast hits to 731 proteins in 255 species: Archae - 0; Bacteria - 0; Metazoa - 343; Fungi - 135; Plants - 140; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT3G53740EnsemblPlants:AT3G53740.1entrez:824541hmmpanther:PTHR10114Pfam:PF01158scanprosite:PS01190
Coordinates (TAIR10) chr3:-:19913921..19914813
Molecular Weight (calculated) 11680.70 Da
IEP (calculated) 12.31
GRAVY (calculated) -0.93
Length 103 amino acids
Sequence (TAIR10)
(BLAST)
001: MTTPQVKTGL FVGLNKGHVV TRRELAPRPR SRKGKTSKRT IFIRNLIKEV AGQAPYEKRI TELLKVAKRK LGTHKRAKRK REEMSSVLRK MRSGGGGATE
101: KKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)