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AT3G53720.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.890
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:17337534 (2007): Golgi trans-Golgi network
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cation/H+ exchanger 20
Curator
Summary (TAIR10)
member of Putative Na+/H+ antiporter family. Involved in the osmoregulation through K(+) fluxes and possibly pH modulation of an active endomembrane system in guard cells.
Computational
Description (TAIR10)
cation/H+ exchanger 20 (CHX20); CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: cation/H+ exchanger 18 (TAIR:AT5G41610.1); Has 10038 Blast hits to 10006 proteins in 2135 species: Archae - 380; Bacteria - 7898; Metazoa - 11; Fungi - 167; Plants - 678; Viruses - 0; Other Eukaryotes - 904 (source: NCBI BLink).
Protein Annotations
BioGrid:9856eggNOG:COG0475eggNOG:KOG1650EMBL:AK227229EMBL:AL132960EMBL:AY926476EMBL:BT002529
EMBL:BT010870EMBL:CP002686EnsemblPlants:AT3G53720EnsemblPlants:AT3G53720.1entrez:824539GeneID:824539Genevisible:Q9M353
GO:GO:0005451GO:GO:0005783GO:GO:0006623GO:GO:0006813GO:GO:0006885GO:GO:0012505GO:GO:0016021
GO:GO:0030007GO:GO:0030104GO:GO:1902600Gramene:AT3G53720.1hmmpanther:PTHR32468hmmpanther:PTHR32468:SF10HOGENOM:HOG000131548
InParanoid:Q9M353InterPro:IPR006153KEGG:ath:AT3G53720OMA:HRIFPSWPaxDb:Q9M353Pfam:PF00999Pfam:Q9M353
PhylomeDB:Q9M353PIR:T45912PRIDE:Q9M353PRO:PR:Q9M353ProteinModelPortal:Q9M353Proteomes:UP000006548RefSeq:NP_190940.1
SMR:Q9M353STRING:3702.AT3G53720.1TAIR:AT3G53720tair10-symbols:ATCHX20tair10-symbols:CHX20TCDB:2.A.37.4.8TMHMM:TMhelix
UniGene:At.35166UniProt:Q9M353
Coordinates (TAIR10) chr3:-:19905826..19910027
Molecular Weight (calculated) 91558.60 Da
IEP (calculated) 9.20
GRAVY (calculated) 0.28
Length 842 amino acids
Sequence (TAIR10)
(BLAST)
001: MPFNITSVKT SSNGVWQGDN PLNFAFPLLI VQTALIIAVS RFLAVLFKPL RQPKVIAEIV GGILLGPSAL GRNMAYMDRI FPKWSMPILE SVASIGLLFF
101: LFLVGLELDL SSIRRSGKRA FGIAVAGITL PFIAGVGVAF VIRNTLYTAA DKPGYAEFLV FMGVALSITA FPVLARILAE LKLLTTQIGE TAMAAAAFND
201: VAAWILLALA VALAGNGGEG GGEKKSPLVS LWVLLSGAGF VVFMLVVIRP GMKWVAKRGS PENDVVRESY VCLTLAGVMV SGFATDLIGI HSIFGAFVFG
301: LTIPKDGEFG QRLIERIEDF VSGLLLPLYF ATSGLKTDVA KIRGAESWGM LGLVVVTACA GKIVGTFVVA VMVKVPAREA LTLGFLMNTK GLVELIVLNI
401: GKEKKVLNDE TFAILVLMAL FTTFITTPTV MAIYKPARGT HRKLKDLSAS QDSTKEELRI LACLHGPANV SSLISLVESI RTTKILRLKL FVMHLMELTE
501: RSSSIIMVQR ARKNGLPFVH RYRHGERHSN VIGGFEAYRQ LGRVAVRPIT AVSPLPTMHE DICHMADTKR VTMIILPFHK RWNADHGHSH HHQDGGGDGN
601: VPENVGHGWR LVNQRVLKNA PCSVAVLVDR GLGSIEAQTL SLDGSNVVER VCVIFFGGPD DRESIELGGR MAEHPAVKVT VIRFLVRETL RSTAVTLRPA
701: PSKGKEKNYA FLTTNVDPEK EKELDEGALE DFKSKWKEMV EYKEKEPNNI IEEILSIGQS KDFDLIVVGR GRIPSAEVAA LAERQAEHPE LGPIGDVLAS
801: SINHIIPSIL VVQQHNKAHV EDITVSKIVS ESSLSINGDT NV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)