AT3G53700.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
maternal effect embryo arrest 40 (MEE40); INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G64320.1); Has 58723 Blast hits to 15213 proteins in 321 species: Archae - 6; Bacteria - 72; Metazoa - 992; Fungi - 1450; Plants - 53933; Viruses - 0; Other Eukaryotes - 2270 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:19900303..19902567 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 84556.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.06 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.12 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 754 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAFSSCLKFY PFSISQAVTL THHSFSLNLT PPSSTISFAS PHSAALSSTD VKLLDSLRSQ PDDSAALRLF NLASKKPNFS PEPALYEEIL LRLGRSGSFD 101: DMKKILEDMK SSRCEMGTST FLILIESYAQ FELQDEILSV VDWMIDEFGL KPDTHFYNRM LNLLVDGNSL KLVEISHAKM SVWGIKPDVS TFNVLIKALC 201: RAHQLRPAIL MLEDMPSYGL VPDEKTFTTV MQGYIEEGDL DGALRIREQM VEFGCSWSNV SVNVIVHGFC KEGRVEDALN FIQEMSNQDG FFPDQYTFNT 301: LVNGLCKAGH VKHAIEIMDV MLQEGYDPDV YTYNSVISGL CKLGEVKEAV EVLDQMITRD CSPNTVTYNT LISTLCKENQ VEEATELARV LTSKGILPDV 401: CTFNSLIQGL CLTRNHRVAM ELFEEMRSKG CEPDEFTYNM LIDSLCSKGK LDEALNMLKQ MELSGCARSV ITYNTLIDGF CKANKTREAE EIFDEMEVHG 501: VSRNSVTYNT LIDGLCKSRR VEDAAQLMDQ MIMEGQKPDK YTYNSLLTHF CRGGDIKKAA DIVQAMTSNG CEPDIVTYGT LISGLCKAGR VEVASKLLRS 601: IQMKGINLTP HAYNPVIQGL FRKRKTTEAI NLFREMLEQN EAPPDAVSYR IVFRGLCNGG GPIREAVDFL VELLEKGFVP EFSSLYMLAE GLLTLSMEET 701: LVKLVNMVMQ KARFSEEEVS MVKGLLKIRK FQDALATLGG VLDSRQPRRT YRSR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)