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AT3G53460.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27177187 (2016): nucleus
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:22318864 (2012): plasma membrane
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16648217 (2006): plastid
  • PMID:14729914 (2004): plastid
  • PMID:11826309 (2002): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : chloroplast RNA-binding protein 29
Curator
Summary (TAIR10)
Encodes a nuclear gene with a consensus RNA-binding domain that is localized to the chloroplast.
Computational
Description (TAIR10)
chloroplast RNA-binding protein 29 (CP29); FUNCTIONS IN: RNA binding, poly(U) RNA binding; LOCATED IN: thylakoid, chloroplast stroma, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G37220.1); Has 992946 Blast hits to 485878 proteins in 21699 species: Archae - 20986; Bacteria - 587269; Metazoa - 197754; Fungi - 28530; Plants - 64033; Viruses - 69323; Other Eukaryotes - 25051 (source: NCBI BLink).
Protein Annotations
BioGrid:9831EMBL:AL132966EMBL:AY039909EMBL:AY077674EMBL:AY087840EMBL:CP002686EMBL:D31710
EMBL:D31711EnsemblPlants:AT3G53460EnsemblPlants:AT3G53460.1EnsemblPlants:AT3G53460.2EnsemblPlants:AT3G53460.3entrez:824514ExpressionAtlas:Q43349
Gene3D:3.30.70.330GeneID:824514Genevisible:Q43349GO:GO:0000166GO:GO:0003723GO:GO:0006397GO:GO:0009507
GO:GO:0009631GO:GO:0030529GO:GO:0043489hmmpanther:PTHR24012HOGENOM:HOG000276232InParanoid:Q43349IntAct:Q43349
InterPro:IPR000504InterPro:IPR012677iPTMnet:Q43349KEGG:ath:AT3G53460Pfam:PF00076Pfam:Q43349Pfscan:PS50102
PhylomeDB:Q43349PIR:S53490PIR:T45886PRIDE:Q43349PRO:PR:Q43349PROSITE:PS50102ProteinModelPortal:Q43349
Proteomes:UP000006548RefSeq:NP_001190078.1RefSeq:NP_190914.1RefSeq:NP_850692.2SMART:SM00360SMR:Q43349SUPFAM:SSF54928
TAIR:AT3G53460tair10-symbols:CP29UniGene:At.70993UniProt:Q43349
Coordinates (TAIR10) chr3:-:19819738..19821423
Molecular Weight (calculated) 36009.30 Da
IEP (calculated) 4.98
GRAVY (calculated) -0.49
Length 342 amino acids
Sequence (TAIR10)
(BLAST)
001: MSASASSLSA FNPKSLPLCV SRPASVSVLP PSLSFKLHSD HLVSIFASSA LKCSSPAEYP SRFVRNVAVS SDFEVEEDDM FADGDDSAPV ERNSFSPDLK
101: LFVGNLSFNV DSAQLAQLFE SAGNVEMVEV IYDKVTGRSR GFGFVTMSTA AEVEAAAQQF NGYEFEGRPL RVNAGPPPPK REESFSRGPR SGGYGSERGG
201: GYGSERGGGY GSERGGGYGS ERGGGYGSQR SGGGYGGSQR SSYGSGSGSG SGSGSGNRLY VGNLSWGVDD MALENLFNEQ GKVVEARVIY DRDSGRSKGF
301: GFVTLSSSQE VQKAINSLNG ADLDGRQIRV SEAEARPPRG QF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)