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AT3G53450.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Putative lysine decarboxylase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Putative lysine decarboxylase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lysine biosynthetic process via diaminopimelate; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00730 (InterPro:IPR005269); BEST Arabidopsis thaliana protein match is: lysine decarboxylase family protein (TAIR:AT2G37210.1); Has 5287 Blast hits to 5285 proteins in 1551 species: Archae - 21; Bacteria - 3653; Metazoa - 10; Fungi - 132; Plants - 402; Viruses - 0; Other Eukaryotes - 1069 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1476-MONOMERDNASU:824513EC:3.2.2.n1eggNOG:COG1611eggNOG:ENOG410IHVEEMBL:AL132966EMBL:CP002686
EnsemblPlants:AT3G53450EnsemblPlants:AT3G53450.1entrez:824513GeneID:824513Genevisible:Q9LFH3GO:GO:0005634GO:GO:0005829
GO:GO:0009691GO:GO:0016799Gramene:AT3G53450.1hmmpanther:PTHR31223hmmpanther:PTHR31223:SF17HOGENOM:HOG000156894InterPro:IPR005269
InterPro:IPR031100KEGG:ath:AT3G53450OMA:FISTNARPaxDb:Q9LFH3Pfam:PF03641Pfam:Q9LFH3PhylomeDB:Q9LFH3
PIR:T45885PRIDE:Q9LFH3PRO:PR:Q9LFH3ProteinModelPortal:Q9LFH3Proteomes:UP000006548RefSeq:NP_190913.1SMR:Q9LFH3
STRING:3702.AT3G53450.1SUPFAM:SSF102405TAIR:AT3G53450TIGRfam:TIGR00730TIGRFAMs:TIGR00730UniGene:At.53918UniProt:Q9LFH3
Coordinates (TAIR10) chr3:-:19812977..19815430
Molecular Weight (calculated) 23546.20 Da
IEP (calculated) 4.97
GRAVY (calculated) -0.13
Length 215 amino acids
Sequence (TAIR10)
(BLAST)
001: MEVNNETMQK SKFGRICVFC GSSQGKKSSY QDAAVDLGNE LVLRNIDLVY GGGSIGLMGL VSQAVHDGGR HVIGVIPKTL MPRELTGETV GEVRAVADMH
101: QRKAEMARHS DAFIALPGGY GTLEELLEVI TWAQLGIHDK PVGLLNVDGY YNSLLSFIDK AVEEGFISTN ARQIIISAPT AKELVKKLEE YSPCHESVAT
201: KLCWEIERID YSSED
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)