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AT3G53440.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 0.859
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Homeodomain-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Homeodomain-like superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), MYB-like (InterPro:IPR017877); Has 4379 Blast hits to 2740 proteins in 256 species: Archae - 0; Bacteria - 81; Metazoa - 1861; Fungi - 384; Plants - 214; Viruses - 25; Other Eukaryotes - 1814 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYUKeggNOG:ENOG410YK2SEMBL:AK117287EMBL:AL132966EMBL:BT005904EMBL:CP002686EnsemblPlants:AT3G53440
EnsemblPlants:AT3G53440.1EnsemblPlants:AT3G53440.2entrez:824512GeneID:824512GO:GO:0003677Gramene:AT3G53440.1Gramene:AT3G53440.2
hmmpanther:PTHR14000hmmpanther:PTHR14000:SF8HOGENOM:HOG000153010InterPro:IPR009057InterPro:IPR017877KEGG:ath:AT3G53440ncoils:Coil
OMA:QGAYLTVPfscan:PS50090PhylomeDB:Q9LFH4PIR:T45884PROSITE:PS50090Proteomes:UP000006548RefSeq:NP_190912.1
RefSeq:NP_850691.1SMR:Q9LFH4SUPFAM:SSF46689TAIR:AT3G53440UniGene:At.35193UniProt:Q9LFH4
Coordinates (TAIR10) chr3:+:19810936..19812474
Molecular Weight (calculated) 57334.00 Da
IEP (calculated) 10.42
GRAVY (calculated) -0.95
Length 512 amino acids
Sequence (TAIR10)
(BLAST)
001: MTRRKSTVVL PQPIRRSARL ISLQNRDSQV KPRKDLGFGS EPTKKTRREV LRGLSKRLVY SSDSPIEDSR SKKLNISKDG FPSLRRSLRL SSRECPEVNK
101: EKPKTASTSS SRTKSSTTVS SSCALRRSPR FSSGGGESVD QSSSSIGKKS GNSVLSSCST KSISSEKVKG GDGLKSKDRS RSRVRPKTKK MFSGCDDNEE
201: EEEEVSVCLT ERKRMRIAKP NEEENAEAKA DEVKRKGKEE EEEEDEEEGL KAKNKLEKGG WTEELELALQ GAYLTVKPSP NFWKKVAKMV PGKSAQECFD
301: RVNSALITPR QAQPRRATKT ILSTIPQFSL SASKLLKPNS PKTKIRQRRN NLSKKVVRHL LEKQNHMDQG LGFDLFSVLE PNTTSNFLST PMEKGRSLPK
401: ILESPVPCSS KDPTTLVSPP VLKQVKNKAL HEKYIDHLHI RDAKRKAEST RLAGKENIRP IEIQKKDSVR AAKDALFFDV QDAIQKLKGL EAENSSSSSE
501: FCYDHVETDE ED
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)