AT3G53440.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.919 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Homeodomain-like superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Homeodomain-like superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), MYB-like (InterPro:IPR017877); Has 4379 Blast hits to 2740 proteins in 256 species: Archae - 0; Bacteria - 81; Metazoa - 1861; Fungi - 384; Plants - 214; Viruses - 25; Other Eukaryotes - 1814 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:19810936..19812474 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 57334.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.42 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.95 | ||||||||||||||||||||||||||||||||||||
| Length | 512 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTRRKSTVVL PQPIRRSARL ISLQNRDSQV KPRKDLGFGS EPTKKTRREV LRGLSKRLVY SSDSPIEDSR SKKLNISKDG FPSLRRSLRL SSRECPEVNK 101: EKPKTASTSS SRTKSSTTVS SSCALRRSPR FSSGGGESVD QSSSSIGKKS GNSVLSSCST KSISSEKVKG GDGLKSKDRS RSRVRPKTKK MFSGCDDNEE 201: EEEEVSVCLT ERKRMRIAKP NEEENAEAKA DEVKRKGKEE EEEEDEEEGL KAKNKLEKGG WTEELELALQ GAYLTVKPSP NFWKKVAKMV PGKSAQECFD 301: RVNSALITPR QAQPRRATKT ILSTIPQFSL SASKLLKPNS PKTKIRQRRN NLSKKVVRHL LEKQNHMDQG LGFDLFSVLE PNTTSNFLST PMEKGRSLPK 401: ILESPVPCSS KDPTTLVSPP VLKQVKNKAL HEKYIDHLHI RDAKRKAEST RLAGKENIRP IEIQKKDSVR AAKDALFFDV QDAIQKLKGL EAENSSSSSE 501: FCYDHVETDE ED |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)