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AT3G53360.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G39530.1); Has 50551 Blast hits to 14033 proteins in 266 species: Archae - 0; Bacteria - 13; Metazoa - 180; Fungi - 93; Plants - 49461; Viruses - 0; Other Eukaryotes - 804 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AL132966EMBL:CP002686
EnsemblPlants:AT3G53360EnsemblPlants:AT3G53360.1entrez:824504Gene3D:1.25.40.10
GeneID:824504Genevisible:Q9LFI1GO:GO:0005739Gramene:AT3G53360.1
hmmpanther:PTHR24015hmmpanther:PTHR24015:SF65HOGENOM:HOG000237569InParanoid:Q9LFI1
InterPro:IPR002885InterPro:IPR011990KEGG:ath:AT3G53360OMA:GILNIDP
PaxDb:Q9LFI1Pfam:PF01535Pfam:PF13041Pfam:Q9LFI1
Pfscan:PS51375PhylomeDB:Q9LFI1PIR:T45876PRIDE:Q9LFI1
PRO:PR:Q9LFI1PROSITE:PS51375ProteinModelPortal:Q9LFI1Proteomes:UP000006548
RefSeq:NP_190904.1SMR:Q9LFI1STRING:3702.AT3G53360.1SUPFAM:SSF48452
TAIR:AT3G53360TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.53917
UniProt:Q9LFI1
Coordinates (TAIR10) chr3:+:19784502..19786808
Molecular Weight (calculated) 85679.30 Da
IEP (calculated) 6.75
GRAVY (calculated) -0.00
Length 768 amino acids
Sequence (TAIR10)
(BLAST)
001: MATMLRLGAR VSVSNSQILA TSSVVSTIKT EELMNDHINS LCKSNFYREA LEAFDFAQKN SSFKIRLRTY ISLICACSSS RSLAQGRKIH DHILNSNCKY
101: DTILNNHILS MYGKCGSLRD AREVFDFMPE RNLVSYTSVI TGYSQNGQGA EAIRLYLKML QEDLVPDQFA FGSIIKACAS SSDVGLGKQL HAQVIKLESS
201: SHLIAQNALI AMYVRFNQMS DASRVFYGIP MKDLISWSSI IAGFSQLGFE FEALSHLKEM LSFGVFHPNE YIFGSSLKAC SSLLRPDYGS QIHGLCIKSE
301: LAGNAIAGCS LCDMYARCGF LNSARRVFDQ IERPDTASWN VIIAGLANNG YADEAVSVFS QMRSSGFIPD AISLRSLLCA QTKPMALSQG MQIHSYIIKW
401: GFLADLTVCN SLLTMYTFCS DLYCCFNLFE DFRNNADSVS WNTILTACLQ HEQPVEMLRL FKLMLVSECE PDHITMGNLL RGCVEISSLK LGSQVHCYSL
501: KTGLAPEQFI KNGLIDMYAK CGSLGQARRI FDSMDNRDVV SWSTLIVGYA QSGFGEEALI LFKEMKSAGI EPNHVTFVGV LTACSHVGLV EEGLKLYATM
601: QTEHGISPTK EHCSCVVDLL ARAGRLNEAE RFIDEMKLEP DVVVWKTLLS ACKTQGNVHL AQKAAENILK IDPFNSTAHV LLCSMHASSG NWENAALLRS
701: SMKKHDVKKI PGQSWIEIED KIHIFFAEDI FHPERDDIYT VLHNIWSQML DECNPQHKKR LQFIHETG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)