AT3G53240.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.711 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : receptor like protein 45 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
receptor like protein 45 (RLP45); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 15 (TAIR:AT1G74190.1); Has 114871 Blast hits to 27541 proteins in 1042 species: Archae - 49; Bacteria - 7290; Metazoa - 23394; Fungi - 1166; Plants - 74458; Viruses - 12; Other Eukaryotes - 8502 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:19735927..19739047 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 100633.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.83 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.05 | ||||||||||||||||||||||||||||||||||||||||
| Length | 891 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSDRSCCHW RRIKCDITSK RVIGISLSLE SIRPPDPLPQ LNLTFFYPFE ELQSLNLSSG YFKGWFDERK GGKGLGSLRN LETLDLGVNF YDTSVLPYLN 101: EAVSLKTLIL HDNLFKGGFP VQELINLTSL EVLDLKFNKF SGQLPTQELT NLRNLRALDL SNNKFSGSLQ KQGICRLEQL QELRLSRNRF EGEIPLCFSR 201: FSKLRVLDLS SNHLSGKIPY FISDFKSMEY LSLLDNDFEG LFSLGLITEL TELKVFKLSS RSGMLQIVET NVSGGLQSQL SSIMLSHCNL GKIPGFLWYQ 301: QELRVIDLSN NILSGVFPTW LLENNTELQA LLLQNNSFKT LTLPRTMRRL QILDLSVNNF NNQLPKDVGL ILASLRHLNL SNNEFLGNMP SSMARMENIE 401: FMDLSYNNFS GKLPRNLFTG CYSLSWLKLS HNRFSGPIIR KSSDETSLIT LIMDNNMFTG KIPRTLLNLR MLSVIDLSNN LLTGTIPRWL GNFFLEVLRI 501: SNNRLQGAIP PSLFNIPYLW LLDLSGNFLS GSLPLRSSSD YGYILDLHNN NLTGSIPDTL WYGLRLLDLR NNKLSGNIPL FRSTPSISVV LLRENNLTGK 601: IPVELCGLSN VRMLDFAHNR LNESIPSCVT NLSFGSGGHS NADSDWYPAS LLSNFMEIYT EVYYESLIVS DRFSLDYSVD FNVQVEFAVK QRYDLYMRGT 701: LNQMFGLDLS SNELSGNIPE ELGDLKRVRS LNLSRNSLSG SIPGSFSNLR SIESLDLSFN KLHGTIPSQL TLLQSLVVFN VSYNNLSGVI PQGKQFNTFG 801: EKSYLGNFLL CGSPTKRSCG GTTISSGKEY EDDDESGLLD IVVLWWSLGT TYVTVMMGFL VFLCFDSPWR RAWFCLVDTF IDRVKDVLGV I |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)