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AT3G53170.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: glutamine biosynthetic process; LOCATED IN: nucleolus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G48730.1); Has 41000 Blast hits to 13619 proteins in 279 species: Archae - 1; Bacteria - 35; Metazoa - 326; Fungi - 348; Plants - 39122; Viruses - 0; Other Eukaryotes - 1168 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AL132958EMBL:CP002686EnsemblPlants:AT3G53170EnsemblPlants:AT3G53170.1entrez:824483
GeneID:824483Genevisible:Q9SCP4Gramene:AT3G53170.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF425HOGENOM:HOG000239665InParanoid:Q9SCP4
InterPro:IPR002885KEGG:ath:AT3G53170PaxDb:Q9SCP4Pfam:PF01535Pfam:PF13041Pfam:PF13812Pfam:Q9SCP4
Pfscan:PS51375PhylomeDB:Q9SCP4PIR:T46163PRIDE:Q9SCP4PRO:PR:Q9SCP4PROSITE:PS51375ProteinModelPortal:Q9SCP4
Proteomes:UP000006548RefSeq:NP_190885.5SMR:Q9SCP4STRING:3702.AT3G53170.1TAIR:AT3G53170TIGRfam:TIGR00756TIGRFAMs:TIGR00756
UniGene:At.53912UniProt:Q9SCP4
Coordinates (TAIR10) chr3:-:19704600..19706417
Molecular Weight (calculated) 56399.80 Da
IEP (calculated) 8.58
GRAVY (calculated) -0.11
Length 499 amino acids
Sequence (TAIR10)
(BLAST)
001: MALIQNPVQG TTSAYANEIA QLGFSRSVVQ QHISSPVYFR CIPTISITPT MCSTKVPNER TEKMNSGLIS TRHQVDPKKE LSRILRTDAA VKGIERKANS
101: EKYLTLWPKA VLEALDEAIK ENRWQSALKI FNLLRKQHWY EPRCKTYTKL FKVLGNCKQP DQASLLFEVM LSEGLKPTID VYTSLISVYG KSELLDKAFS
201: TLEYMKSVSD CKPDVFTFTV LISCCCKLGR FDLVKSIVLE MSYLGVGCST VTYNTIIDGY GKAGMFEEME SVLADMIEDG DSLPDVCTLN SIIGSYGNGR
301: NMRKMESWYS RFQLMGVQPD ITTFNILILS FGKAGMYKKM CSVMDFMEKR FFSLTTVTYN IVIETFGKAG RIEKMDDVFR KMKYQGVKPN SITYCSLVNA
401: YSKAGLVVKI DSVLRQIVNS DVVLDTPFFN CIINAYGQAG DLATMKELYI QMEERKCKPD KITFATMIKT YTAHGIFDAV QELEKQMISS DIGKKRLTE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)