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AT3G53100.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Predictors External Curations
AdaBoost: extracellularATP: mitochondrionATP: plastidBaCelLo: endoplasmic reticulum
BaCelLo: extracellularBaCelLo: golgiiPSORT: endoplasmic reticulumiPSORT: extracellular
iPSORT: golgiMitoPred: mitochondrionMitoprot 2: mitochondrionMultiLoc: extracellular
Plant-mPloc: extracellularPredotar: endoplasmic reticulumPredotar: extracellularPredotar: golgi
PredSL: endoplasmic reticulumPredSL: extracellularPredSL: golgiPProwler: endoplasmic reticulum
PProwler: extracellularPProwler: golgiSLPFA: endoplasmic reticulumSLPFA: extracellular
SLPFA: golgiSLP-Local: endoplasmic reticulumSLP-Local: extracellularSLP-Local: golgi
SubLoc: extracellularTargetP: endoplasmic reticulumTargetP: extracellularTargetP: golgi
WoLF PSORT: plastidYLoc: extracellular
 SwissProt : extracellular 16381842
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GDSL-like Lipase/Acylhydrolase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)		 GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase family protein (TAIR:AT5G03810.1); Has 3459 Blast hits to 3423 proteins in 237 species: Archae - 0; Bacteria - 370; Metazoa - 0; Fungi - 18; Plants - 3053; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G53100-MONOMEREC:3.1.1.-eggNOG:COG3240eggNOG:ENOG410IHDA
EMBL:AK229079EMBL:AL132958EMBL:BT033018EMBL:CP002686
EnsemblPlants:AT3G53100EnsemblPlants:AT3G53100.1entrez:824476Gene3D:3.40.50.1110
GeneID:824476Genevisible:Q0WPI9GO:GO:0005576GO:GO:0016042
GO:GO:0016788Gramene:AT3G53100.1hmmpanther:PTHR22835hmmpanther:PTHR22835:SF146
HOGENOM:HOG000237650InParanoid:Q0WPI9InterPro:IPR001087InterPro:IPR013830
KEGG:ath:AT3G53100OMA:FETKRACPaxDb:Q0WPI9Pfam:PF00657
Pfam:Q0WPI9PhylomeDB:Q0WPI9PIR:T46156PRIDE:Q0WPI9
PRO:PR:Q0WPI9ProteinModelPortal:Q0WPI9Proteomes:UP000006548RefSeq:NP_190878.2
TAIR:AT3G53100UniGene:At.35226UniProt:Q0WPI9
Coordinates (TAIR10) chr3:-:19684989..19686542
Molecular Weight (calculated) 38694.60 Da
IEP (calculated) 8.46
GRAVY (calculated) 0.13
Length 351 amino acids
Sequence (TAIR10)
(BLAST) 		001: MQKMRVSGFR VLLLVSCFFC KSKGAVVPAL IMFGDSIVDV GNNNNLLSIV KSNFLPYGRD FIDQRPTGRF CNGKLAVDFS AEYLGFSSYP PAFLSREASN
101: ENILIGANFA SASSGYYDAT SVPFGSISLT RQLSYYRAYQ NRVTRMIGRG NARILFSRGI HILSAGSSDF LQNYYINPLL NILNTPDQFA DILLRSFSEF
201: IQNLYELGAR RIGVISLPPM GCLPAAITLF GAGNKSCVER LNNDAIMFNT KLENTTRLLM NRHSGLRLVA FNVYQPFLDI ITNPTDNGFF ETKRACCGTG
301: TIETSFLCNS LSFGTCVNAT GYVFWDGFHP TEAVNELLAG QLLGQGISLI N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)