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AT3G52800.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : A20/AN1-like zinc finger family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
A20/AN1-like zinc finger family protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: response to chitin; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, AN1-type (InterPro:IPR000058), Zinc finger, A20-type (InterPro:IPR002653); BEST Arabidopsis thaliana protein match is: A20/AN1-like zinc finger family protein (TAIR:AT2G36320.1); Has 1056 Blast hits to 1045 proteins in 148 species: Archae - 0; Bacteria - 0; Metazoa - 445; Fungi - 9; Plants - 478; Viruses - 6; Other Eukaryotes - 118 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111UWCeggNOG:KOG3173EMBL:AL353912EMBL:AY042871
EMBL:AY072524EMBL:CP002686EnsemblPlants:AT3G52800EnsemblPlants:AT3G52800.1
entrez:824446Gene3D:4.10.1110.10GeneID:824446Genevisible:Q94B40
GO:GO:0003677GO:GO:0008270GO:GO:0010200Gramene:AT3G52800.1
hmmpanther:PTHR10634HOGENOM:HOG000238229InParanoid:Q94B40InterPro:IPR000058
InterPro:IPR002653KEGG:ath:AT3G52800OMA:RCQTPESPaxDb:Q94B40
Pfam:PF01428Pfam:PF01754Pfam:Q94B40Pfscan:PS51036
Pfscan:PS51039PhylomeDB:Q94B40PIR:T49033PRIDE:Q94B40
PRO:PR:Q94B40PROSITE:PS51036PROSITE:PS51039ProteinModelPortal:Q94B40
Proteomes:UP000006548RefSeq:NP_190848.1SMART:SM00154SMART:SM00259
SMR:Q94B40STRING:3702.AT3G52800.1SUPFAM:SSF118310SUPFAM:SSF57716
TAIR:AT3G52800UniGene:At.22407UniGene:At.23179UniProt:Q94B40
Coordinates (TAIR10) chr3:+:19569806..19570318
Molecular Weight (calculated) 18599.30 Da
IEP (calculated) 8.82
GRAVY (calculated) -0.47
Length 170 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEEHRCQTP ESNRLCVNNC GFLGSSATMN LCSNCYGDLC LKQQQQSSSI KSTVESSLSV SPPSSSSSEI SSPIIPPLLK NPSVKLEVPE KKAVISLPTT
101: EQNQQQRPNR CTTCRKRVGL TGFKCRCGTM FCGVHRYPEI HGCSYDFKSA GREEIAKANP LVKAAKLQKI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)