suba logo
AT3G52730.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:22923678 (2012): mitochondrion
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:21841088 (2011): mitochondrion
  • PMID:21472856 (2011): mitochondrion
  • PMID:21433285 (2011): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:18189341 (2008): mitochondrion
  • PMID:14671022 (2004): mitochondrion
  • PMID:12970493 (2003): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein; FUNCTIONS IN: ubiquinol-cytochrome-c reductase activity; INVOLVED IN: mitochondrial electron transport, ubiquinol to cytochrome c; LOCATED IN: mitochondrial envelope, mitochondrion, mitochondrial respiratory chain complex III, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquinol-cytochrome C reductase, UQCRX/QCR9-like (InterPro:IPR008027); Has 75 Blast hits to 75 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 19; Plants - 51; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XUZEeggNOG:KOG3494EMBL:AL353912EMBL:AY054592EMBL:BT000387EMBL:CP002686EnsemblPlants:AT3G52730
EnsemblPlants:AT3G52730.1entrez:824439Gene3D:1.20.5.260GeneID:824439GO:GO:0005739GO:GO:0005750GO:GO:0006122
GO:GO:0016020Gramene:AT3G52730.1hmmpanther:PTHR12980hmmpanther:PTHR12980:SF0HOGENOM:HOG000215187IntAct:Q9LXJ2InterPro:IPR008027
KEGG:ath:AT3G52730KO:K00419OMA:VWERNNTPANTHER:PTHR12980Pfam:PF05365PhylomeDB:Q9LXJ2PIR:T49026
PRO:PR:Q9LXJ2Proteomes:UP000006548RefSeq:NP_190841.1SMR:Q9LXJ2STRING:3702.AT3G52730.1SUPFAM:SSF81514TAIR:AT3G52730
UniGene:At.24987UniProt:Q9LXJ2
Coordinates (TAIR10) chr3:-:19543146..19544167
Molecular Weight (calculated) 8449.12 Da
IEP (calculated) 9.80
GRAVY (calculated) -0.47
Length 72 amino acids
Sequence (TAIR10)
(BLAST)
1: MEYAARRNQK GAFEGFYKLI MRRNSVYVTF IIAGAFFGER AVDYGVHKLW ERNNVGKRYE DISVLGQRPV EE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)