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AT3G52710.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.897
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36220.1); Has 64 Blast hits to 64 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXBAeggNOG:ENOG410YUY6EMBL:AL353912EMBL:AY074311EMBL:AY096409EMBL:CP002686EnsemblPlants:AT3G52710
EnsemblPlants:AT3G52710.1entrez:824437GeneID:824437GO:GO:0005886Gramene:AT3G52710.1hmmpanther:PTHR34120hmmpanther:PTHR34120:SF2
HOGENOM:HOG000091113KEGG:ath:AT3G52710OMA:DRKVACEPhylomeDB:Q9LXJ3PIR:T49024Proteomes:UP000006548RefSeq:NP_190839.1
TAIR:AT3G52710UniGene:At.35266UniProt:Q9LXJ3
Coordinates (TAIR10) chr3:+:19534638..19535507
Molecular Weight (calculated) 31695.80 Da
IEP (calculated) 11.47
GRAVY (calculated) -0.80
Length 289 amino acids
Sequence (TAIR10)
(BLAST)
001: MPQVVASACT GGSDRKISCE TLADDNEDSP HNSKIRPVSI SAVDFPPESY SLSKEAQLEW LNDNAFFERK ESQKGNSSAP ISNPNTNPNS SSHRISLKSK
101: ASIIRLPKPQ KTCFNEAKKR RNCRIARTLM IPKRIGSRLK SDPTLSEPCS PKVSCIGRVR SKRDRSRRMQ RQKSGRTNSF KDKPVPVKKP GFFASFRAIF
201: RTGGGCKDLS ASGAHAPRRD VVVSPPRVSV RRSTDIRGRL PPGDVGKSSP QRNSTGSRRS IDGGEPVLPG LGGMTRFTSG RRPDLLVEV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)