suba logo
AT3G52620.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 0.989
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 11 Blast hits to 11 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J7QTeggNOG:ENOG41114IEEMBL:AL353912EMBL:AY630779
EMBL:AY924792EMBL:CP002686EnsemblPlants:AT3G52620EnsemblPlants:AT3G52620.1
entrez:824428GeneID:824428GO:GO:0016021Gramene:AT3G52620.1
hmmpanther:PTHR37741hmmpanther:PTHR37741:SF1HOGENOM:HOG000153156KEGG:ath:AT3G52620
ncoils:CoilPhylomeDB:Q9LXK2PIR:T49015Proteomes:UP000006548
RefSeq:NP_190830.1STRING:3702.AT3G52620.1TAIR:AT3G52620TMHMM:TMhelix
UniGene:At.50853UniProt:Q9LXK2
Coordinates (TAIR10) chr3:+:19513113..19513556
Molecular Weight (calculated) 9344.11 Da
IEP (calculated) 9.13
GRAVY (calculated) -0.44
Length 87 amino acids
Sequence (TAIR10)
(BLAST)
1: MATDTTTFPE GDAEAELNPG QNKNFEVDPV SSEIASEKVQ KIVEKRENAK AKRDGARTLK NTIIVSAVIV AVAGAAFAIT KKLKENK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)