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AT3G52590.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.992
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ubiquitin extension protein 1
Curator
Summary (TAIR10)
Ubiquitin extension protein
Computational
Description (TAIR10)
ubiquitin extension protein 1 (UBQ1); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: response to water deprivation, protein ubiquitination, embryo development ending in seed dormancy; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L40e (InterPro:IPR001975), Ubiquitin subgroup (InterPro:IPR019956), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: Ubiquitin supergroup;Ribosomal protein L40e (TAIR:AT2G36170.1); Has 12437 Blast hits to 7147 proteins in 724 species: Archae - 0; Bacteria - 19; Metazoa - 5493; Fungi - 1424; Plants - 3085; Viruses - 174; Other Eukaryotes - 2242 (source: NCBI BLink).
Protein Annotations
BioGrid:3533BioGrid:9743eggNOG:COG1552eggNOG:ENOG410IUNUEMBL:AK317456EMBL:AL050300EMBL:AL353912
EMBL:AY035148EMBL:AY059080EMBL:AY085820EMBL:CP002686EMBL:J05507EMBL:Z29051EnsemblPlants:AT2G36170.1
EnsemblPlants:AT3G52590EnsemblPlants:AT3G52590.1entrez:818189entrez:824425ExpressionAtlas:Q42202GeneID:818189GeneID:824425
Genevisible:Q42202GO:GO:0003735GO:GO:0005634GO:GO:0005840GO:GO:0006412GO:GO:0016567Gramene:AT2G36170.1
Gramene:AT3G52590.1hmmpanther:PTHR10666InParanoid:Q42202InterPro:IPR000626InterPro:IPR001975InterPro:IPR011332InterPro:IPR019954
InterPro:IPR019956InterPro:IPR029071KEGG:ath:AT2G36170KEGG:ath:AT3G52590KO:K02927PaxDb:Q42202Pfam:B9DHA6
Pfam:PF00240Pfam:PF01020Pfam:Q42202Pfscan:PS50053PIR:A36571PRIDE:Q42202PRINTS:PR00348
PRO:PR:Q42202PROSITE:PS00299PROSITE:PS50053ProteinModelPortal:Q42202Proteomes:UP000006548Reactome:R-ATH-110312Reactome:R-ATH-110314
Reactome:R-ATH-110320Reactome:R-ATH-156827Reactome:R-ATH-174184Reactome:R-ATH-179409Reactome:R-ATH-1799339Reactome:R-ATH-349425Reactome:R-ATH-450302
Reactome:R-ATH-450321Reactome:R-ATH-5358346Reactome:R-ATH-5632684Reactome:R-ATH-5655862Reactome:R-ATH-5656121Reactome:R-ATH-5656169Reactome:R-ATH-5696394
Reactome:R-ATH-5696395Reactome:R-ATH-5696397Reactome:R-ATH-5696400Reactome:R-ATH-6781823Reactome:R-ATH-6782135Reactome:R-ATH-6782210Reactome:R-ATH-68949
Reactome:R-ATH-69017Reactome:R-ATH-72689Reactome:R-ATH-72706Reactome:R-ATH-917729Reactome:R-ATH-975956Reactome:R-ATH-975957Reactome:R-ATH-983168
RefSeq:NP_565836.1RefSeq:NP_566969.1scanprosite:PS00299SMART:SM00213SMART:SM01377SMR:Q42202STRING:3702.AT3G52590.1
SUPFAM:SSF54236SUPFAM:SSF57829TAIR:AT3G52590tair10-symbols:EMB2167tair10-symbols:ERD16tair10-symbols:HAP4tair10-symbols:UBQ1
UniGene:At.23108UniGene:At.24656UniGene:At.35280UniProt:B9DHA6UniProt:Q42202
Coordinates (TAIR10) chr3:+:19505668..19506681
Molecular Weight (calculated) 14734.30 Da
IEP (calculated) 10.61
GRAVY (calculated) -0.64
Length 128 amino acids
Sequence (TAIR10)
(BLAST)
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGIIEP SLMMLARKYN QDKMICRKCY
101: ARLHPRAVNC RKKKCGHSNQ LRPKKKIK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)