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AT3G52500.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:27177187 (2016): nucleus
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:24393051 (2015): extracellular region
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:21109274 (2011): extracellular region
  • PMID:19334764 (2009): plasma membrane
  • PMID:16729891 (2006): extracellular region
  • PMID:16356755 (2006): extracellular region
  • PMID:16287169 (2006): extracellular region
  • PMID:14595688 (2003): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Eukaryotic aspartyl protease family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cell wall, membrane, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT5G45120.1); Has 2297 Blast hits to 2281 proteins in 180 species: Archae - 0; Bacteria - 0; Metazoa - 245; Fungi - 122; Plants - 1871; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G52500-MONOMEReggNOG:ENOG410XNV7eggNOG:KOG1339EMBL:AF360193EMBL:AL050300EMBL:AY040006EMBL:AY054526
EMBL:BT006605EMBL:CP002686EnsemblPlants:AT3G52500EnsemblPlants:AT3G52500.1entrez:824415Gene3D:2.40.70.10GeneID:824415
GO:GO:0004190GO:GO:0005618GO:GO:0009505GO:GO:0016020Gramene:AT3G52500.1hmmpanther:PTHR13683hmmpanther:PTHR13683:SF340
InterPro:IPR001461InterPro:IPR001969InterPro:IPR021109InterPro:IPR032799InterPro:IPR032861InterPro:IPR033121KEGG:ath:AT3G52500
MEROPS:A01.A47OMA:IPRFIPKPANTHER:PTHR13683Pfam:PF14541Pfam:PF14543Pfscan:PS51767PhylomeDB:Q9SVD1
PIR:T08449PRINTS:PR00792PROSITE:PS00141PROSITE:PS51767Proteomes:UP000006548RefSeq:NP_566966.1scanprosite:PS00141
SMR:Q9SVD1STRING:3702.AT3G52500.1SUPFAM:SSF50630TAIR:AT3G52500UniGene:At.22182UniGene:At.73143UniProt:Q9SVD1
Coordinates (TAIR10) chr3:-:19465644..19467053
Molecular Weight (calculated) 51007.70 Da
IEP (calculated) 8.30
GRAVY (calculated) -0.15
Length 469 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSIFFFFL IFLSVVSAVK LPLSPFSHSD QSPKDPYLSL RRLAESSIAR AHKLKHGTSI KPDEDALSST TTASATVVKS PLSAKSYGGY SVSLSFGTPS
101: QTIPFVFDTG SSLVWLPCTS RYLCSGCDFS GLDPTLIPRF IPKNSSSSKI IGCQSPKCQF LYGPNVQCRG CDPNTRNCTV GCPPYILQYG LGSTAGVLIT
201: EKLDFPDLTV PDFVVGCSII STRQPAGIAG FGRGPVSLPS QMNLKRFSHC LVSRRFDDTN VTTDLDLDTG SGHNSGSKTP GLTYTPFRKN PNVSNKAFLE
301: YYYLNLRRIY VGRKHVKIPY KYLAPGTNGD GGSIVDSGST FTFMERPVFE LVAEEFASQM SNYTREKDLE KETGLGPCFN ISGKGDVTVP ELIFEFKGGA
401: KLELPLSNYF TFVGNTDTVC LTVVSDKTVN PSGGTGPAII LGSFQQQNYL VEYDLENDRF GFAKKKCSP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)