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AT3G52400.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:23990937 (2013): plasma membrane
  • PMID:22923678 (2012): plasma membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:20374526 (2010): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:15574830 (2004): plasma membrane
  • PMID:15308754 (2004): plasma membrane
  • PMID:14506206 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : syntaxin of plants 122
Curator
Summary (TAIR10)
syntaxin protein, involved in the negative regulation of defense pathways such as programmed cell death, salicylic acid signalling pathway, jasmonic acid signalling pathway
Computational
Description (TAIR10)
syntaxin of plants 122 (SYP122); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: in 9 processes; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: syntaxin of plants 121 (TAIR:AT3G11820.2); Has 2448 Blast hits to 2448 proteins in 275 species: Archae - 5; Bacteria - 34; Metazoa - 1056; Fungi - 527; Plants - 461; Viruses - 0; Other Eukaryotes - 365 (source: NCBI BLink).
Protein Annotations
BioGrid:9723eggNOG:COG5074eggNOG:KOG0810EMBL:AF083808EMBL:AJ245407EMBL:AL050300EMBL:AY050907
EMBL:AY087633EMBL:AY091410EMBL:CP002686EnsemblPlants:AT3G52400EnsemblPlants:AT3G52400.1entrez:824405GeneID:824405
Genevisible:Q9SVC2GO:GO:0000149GO:GO:0005886GO:GO:0006612GO:GO:0006887GO:GO:0006906GO:GO:0009506
GO:GO:0012505GO:GO:0016021GO:GO:0031201GO:GO:0048278GO:GO:0050832Gramene:AT3G52400.1hmmpanther:PTHR19957
hmmpanther:PTHR19957:SF69HOGENOM:HOG000238904InParanoid:Q9SVC2IntAct:Q9SVC2InterPro:IPR000727InterPro:IPR006011InterPro:IPR006012
InterPro:IPR010989iPTMnet:Q9SVC2KEGG:ath:AT3G52400KO:K08486MINT:MINT-8065444ncoils:CoilOMA:RANEVNR
PaxDb:Q9SVC2Pfam:PF00804Pfam:PF05739Pfam:Q9SVC2Pfscan:PS50192PhylomeDB:Q9SVC2PIR:T08459
PIR:T48847PRIDE:Q9SVC2PRO:PR:Q9SVC2PROSITE:PS00914PROSITE:PS50192ProteinModelPortal:Q9SVC2Proteomes:UP000006548
RefSeq:NP_190808.1scanprosite:PS00914SMART:SM00397SMART:SM00503SMR:Q9SVC2STRING:3702.AT3G52400.1SUPFAM:SSF47661
SwissPalm:Q9SVC2TAIR:AT3G52400tair10-symbols:ATSYP122tair10-symbols:SYP122TMHMM:TMhelixUniGene:At.479UniProt:Q9SVC2
Coordinates (TAIR10) chr3:-:19425835..19427032
Molecular Weight (calculated) 37839.10 Da
IEP (calculated) 8.63
GRAVY (calculated) -0.54
Length 341 amino acids
Sequence (TAIR10)
(BLAST)
001: MNDLLSGSFK TSVADGSSPP HSHNIEMSKA KVSGGSCHGG NNLDTFFLDV EVVNEDLKEL DRLCHNLRSS NEQSKTLHNA NAVKELKKKM DADVTAALKT
101: ARRLKGNLEA LDRANEVNRS LPESGPGSSS DRQRTSVVNG LRKKLKDEME KFSRVRETIT NEYKETVGRM CFTVTGEYPD EATLERLIST GESETFLQKA
201: IQEQGRGRIL DTINEIQERH DAVKDIEKSL NELHQVFLDM AVLVEHQGAQ LDDIEGNVKR ANSLVRSGAD RLVKARFYQK NTRKWTCFAI LLLLIIVVLI
301: VVFTVKPWES NGGGGGGAPR QATPVQAQPP PPPAVNRRLL R
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)