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AT3G52310.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ABC-2 type transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ABC-2 type transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; LOCATED IN: plasma membrane; EXPRESSED IN: stem, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC-2 type transporter family protein (TAIR:AT5G06530.1); Has 399105 Blast hits to 362643 proteins in 4152 species: Archae - 6998; Bacteria - 314182; Metazoa - 9528; Fungi - 7070; Plants - 5758; Viruses - 7; Other Eukaryotes - 55562 (source: NCBI BLink).
Protein Annotations
BioGrid:9714eggNOG:COG1131eggNOG:KOG0061EMBL:AL132972
EMBL:BX834384EMBL:CP002686EnsemblPlants:AT3G52310EnsemblPlants:AT3G52310.1
entrez:824396Gene3D:3.40.50.300GeneID:824396Genevisible:Q9FT51
GO:GO:0005524GO:GO:0006810GO:GO:0016021GO:GO:0016887
Gramene:AT3G52310.1hmmpanther:PTHR19241hmmpanther:PTHR19241:SF286HOGENOM:HOG000046080
InParanoid:Q9FT51InterPro:IPR003439InterPro:IPR003593InterPro:IPR013525
InterPro:IPR017871InterPro:IPR027417KEGG:ath:AT3G52310MINT:MINT-8069730
PaxDb:Q9FT51Pfam:PF00005Pfam:PF01061Pfam:Q9FT51
Pfscan:PS50893PhylomeDB:Q9FT51PIR:T46101PRIDE:Q9FT51
PRO:PR:Q9FT51PROSITE:PS00211PROSITE:PS50893ProteinModelPortal:Q9FT51
Proteomes:UP000006548Reactome:R-ATH-917937RefSeq:NP_190799.2scanprosite:PS00211
SMART:SM00382SMR:Q9FT51STRING:3702.AT3G52310.1SUPFAM:SSF52540
TAIR:AT3G52310TMHMM:TMhelixUniGene:At.50270UniProt:Q9FT51
Coordinates (TAIR10) chr3:+:19398663..19402861
Molecular Weight (calculated) 86911.70 Da
IEP (calculated) 9.31
GRAVY (calculated) 0.03
Length 784 amino acids
Sequence (TAIR10)
(BLAST)
001: MEPCATIDSS RNGMRLMVIK GDVCVQAPNK TTQQGASQNL NTRNNMEMGT SSSSSGLVKA KSETLAEALK SSSLDFSNGD GSSHGSKQHV RARTLSSPSY
101: SSNSKNRWNT HIRKAKSAHP ALDLAGLTGG AALSRASSAS LGLSFSFTGF TVPHEEIIAS ERCSNDDILE DIEAATSSVV KFQAEPTFPI YLKFIDITYK
201: VTTKGMTSSS EKSILNGISG SAYPGELLAL MGPSGSGKTT LLNALGGRFN QQNIGGSVSY NDKPYSKHLK TRIGFVTQDD VLFPHLTVKE TLTYTALLRL
301: PKTLTEQEKE QRAASVIQEL GLERCQDTMI GGSFVRGVSG GERKRVCIGN EIMTNPSLLL LDEPTSSLDS TTALKIVQML HCIAKAGKTI VTTIHQPSSR
401: LFHRFDKLVV LSRGSLLYFG KASEAMSYFS SIGCSPLLAM NPAEFLLDLV NGNMNDISVP SALKEKMKII RLELYVRNVK CDVETQYLEE AYKTQIAVME
501: KMKLMAPVPL DEEVKLMITC PKREWGLSWW EQYCLLSLRG IKERRHDYFS WLRVTQVLST AIILGLLWWQ SDITSQRPTR SGLLFFIAVF WGFFPVFTAI
601: FTFPQERAML SKERESNMYR LSAYFVARTT SDLPLDLILP VLFLVVVYFM AGLRLRAESF FLSVLTVFLC IVAAQGLGLA IGASLMDLKK ATTLASVTVM
701: TFMLAGGYFV KKVPFFIAWI RFMSFNYHTY KLLVKVQYEE IMESVNGEEI ESGLKEVSAL VAMIIGYRLV AYFSLRRMKL HSST
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)