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AT3G52240.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 220 Blast hits to 193 proteins in 66 species: Archae - 0; Bacteria - 15; Metazoa - 53; Fungi - 33; Plants - 66; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J062eggNOG:ENOG410Z67JEMBL:AK117719EMBL:CP002686EnsemblPlants:AT3G52240EnsemblPlants:AT3G52240.1entrez:824389
GeneID:824389Gramene:AT3G52240.1hmmpanther:PTHR33701hmmpanther:PTHR33701:SF3HOGENOM:HOG000148333KEGG:ath:AT3G52240ncoils:Coil
OMA:SMVEFPVPhylomeDB:Q8GYC9Proteomes:UP000006548RefSeq:NP_190792.2STRING:3702.AT3G52240.1TAIR:AT3G52240UniGene:At.35316
UniProt:Q8GYC9
Coordinates (TAIR10) chr3:-:19372902..19375799
Molecular Weight (calculated) 74806.10 Da
IEP (calculated) 5.58
GRAVY (calculated) -0.77
Length 680 amino acids
Sequence (TAIR10)
(BLAST)
001: MANQDKLDHH RCIDSEAQDP TSVTIEFLRA RLLAERAVSK SARAKLDGLA DKVAELEEQL KIVSLQRKKA EQATADVLAI LEENGYNDVS DDYDSNSDHE
101: CYSQSNSVLG KSLSWKGRRR EPGSSDKIKE NRNRRHHRGF ECAYFSSPRH RQGRSCRQIR RGEARNVSED YKRDGNPVEF QENGVRTEML PQKNDQVSRT
201: VVDVAVVKGD DSLNKLSNSN GLEKGNSTDI NLERALENRA QVIGSFEEME ETQREWEKNF RENKSSALDL CDVGNHSDVT DESNGEKAQS PLQGSTVVPS
301: LRDTRSIANE VDFRESFETL SHGSPDNSVT SPDKCCNSCG SRSVEQDAYS SRDKGKHISE SPTSEYSQPQ SSKGINEHSS STIRSPPVTQ PNSRGGFFGS
401: TTTTIHEVDD PLVSVKDVKP DTCETVLTAL KQAKLSLQEK VNSLHIRNPD CHSESSYPST PGSYMNTYAL PMEPAFSTKP SLPASSVGSM VEFPVICAAG
501: LFRVPTDFTS DASNRNTFLA SSSQNAMVTH MPERDVPLVP GDQLFSRTAT NNLLNTGFQS QLETSPPLSV DDRLSTTPYI GGPKLWSSFR ADGPPMVDVP
601: GFRLNKGIPR VSGSAISGGT SGFEGNQVSS STYNTPVTPT RSLYPDSVLS SRELYSTPYY TRPFGLSPTS GSDDGLFRRE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)