AT3G52240.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; Has 220 Blast hits to 193 proteins in 66 species: Archae - 0; Bacteria - 15; Metazoa - 53; Fungi - 33; Plants - 66; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:19372902..19375799 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 74806.10 Da | ||||||||||||||||||||||||
| IEP (calculated) | 5.58 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.77 | ||||||||||||||||||||||||
| Length | 680 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MANQDKLDHH RCIDSEAQDP TSVTIEFLRA RLLAERAVSK SARAKLDGLA DKVAELEEQL KIVSLQRKKA EQATADVLAI LEENGYNDVS DDYDSNSDHE 101: CYSQSNSVLG KSLSWKGRRR EPGSSDKIKE NRNRRHHRGF ECAYFSSPRH RQGRSCRQIR RGEARNVSED YKRDGNPVEF QENGVRTEML PQKNDQVSRT 201: VVDVAVVKGD DSLNKLSNSN GLEKGNSTDI NLERALENRA QVIGSFEEME ETQREWEKNF RENKSSALDL CDVGNHSDVT DESNGEKAQS PLQGSTVVPS 301: LRDTRSIANE VDFRESFETL SHGSPDNSVT SPDKCCNSCG SRSVEQDAYS SRDKGKHISE SPTSEYSQPQ SSKGINEHSS STIRSPPVTQ PNSRGGFFGS 401: TTTTIHEVDD PLVSVKDVKP DTCETVLTAL KQAKLSLQEK VNSLHIRNPD CHSESSYPST PGSYMNTYAL PMEPAFSTKP SLPASSVGSM VEFPVICAAG 501: LFRVPTDFTS DASNRNTFLA SSSQNAMVTH MPERDVPLVP GDQLFSRTAT NNLLNTGFQS QLETSPPLSV DDRLSTTPYI GGPKLWSSFR ADGPPMVDVP 601: GFRLNKGIPR VSGSAISGGT SGFEGNQVSS STYNTPVTPT RSLYPDSVLS SRELYSTPYY TRPFGLSPTS GSDDGLFRRE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)