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AT3G52220.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Kinase phosphorylation domain (InterPro:IPR019315); Has 8882 Blast hits to 4920 proteins in 346 species: Archae - 10; Bacteria - 184; Metazoa - 3955; Fungi - 1221; Plants - 712; Viruses - 24; Other Eukaryotes - 2776 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41123EReggNOG:KOG4520EMBL:AF370547EMBL:BT006279EMBL:CP002686EnsemblPlants:AT3G52220EnsemblPlants:AT3G52220.1
entrez:824387GeneID:824387Gramene:AT3G52220.1hmmpanther:PTHR14580hmmpanther:PTHR14580:SF0HOGENOM:HOG000242968InterPro:IPR019315
KEGG:ath:AT3G52220ncoils:CoilOMA:CSESHKKPfam:PF10159PhylomeDB:Q94JX8Proteomes:UP000006548RefSeq:NP_566962.1
STRING:3702.AT3G52220.1TAIR:AT3G52220UniGene:At.20311UniGene:At.68448UniProt:Q94JX8
Coordinates (TAIR10) chr3:-:19369580..19370980
Molecular Weight (calculated) 27541.80 Da
IEP (calculated) 10.04
GRAVY (calculated) -1.73
Length 237 amino acids
Sequence (TAIR10)
(BLAST)
001: MYHPTRGGVR GGRDQFSWDE VKADKYRENY LGHSIKAPVG RWQKGKDLHW YARDKKQKGS EMDAMKEEIQ RVKEQEEQAM REALGLAPKS STRPQGNRLD
101: KQEFTELVKR GSTAEDLGAG NADAVWVHGL GYAKAPRPWE DPSTLASSQK EDADSARLPA DTSGVKTVED GPDDVERDQK KDRREERKPA KREKEERHDR
201: REKRERHEKR SARDSDDRKK HKKEKKEKKR RHDSDSD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)