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AT3G52190.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:16618929 (2006): endoplasmic reticulum
FP Images

onion epidermal cell layer (peroxisomal marker)

At3g-GFP-52190
(full-length)
RFP-peroxisomal markeroverlay

Images by John Bussel
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : phosphate transporter traffic facilitator1
Curator
Summary (TAIR10)
Encodes a plant specific protein structurally related to the SEC12 proteins of the early secretory pathway. Mutation of PHF1 impairs Pi transport. Expression was detected in all tissues, and was induced by Pi starvation. Localized in endoplasmic reticulum (ER), and mutation of PHF1 resulted in ER retention and reduced accumulation of the plasma membrane PHT1;1 transporter.
Computational
Description (TAIR10)
phosphate transporter traffic facilitator1 (PHF1); FUNCTIONS IN: nucleotide binding; INVOLVED IN: cellular response to phosphate starvation, ER to Golgi vesicle-mediated transport, phosphate transport; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G50550.1); Has 6481 Blast hits to 4280 proteins in 402 species: Archae - 34; Bacteria - 2283; Metazoa - 1521; Fungi - 1505; Plants - 384; Viruses - 0; Other Eukaryotes - 754 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRQKeggNOG:KOG0771EMBL:BT028915EnsemblPlants:AT3G52190EnsemblPlants:AT3G52190.1entrez:824384ExpressionAtlas:Q0IGK5
Gene3D:2.130.10.10GeneID:824384GO:GO:0005783GO:GO:0006817GO:GO:0016021Gramene:AT3G52190.1hmmpanther:PTHR23284
hmmpanther:PTHR23284:SF2InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986KEGG:ath:AT3G52190KO:K14003OMA:ISTSHKW
PaxDb:Q0IGK5Pfam:PF00400Pfam:Q8GYE0Pfscan:PS50082Pfscan:PS50294PhylomeDB:Q0IGK5PRIDE:Q0IGK5
PROSITE:PS50082PROSITE:PS50294ProteinModelPortal:Q0IGK5RefSeq:NP_566961.1SMART:SM00320SMR:Q0IGK5STRING:3702.AT3G52190.1
SUPFAM:SSF50978TAIR:AT3G52190tair10-symbols:PHF1TMHMM:TMhelixUniGene:At.20633UniProt:Q0IGK5UniProt:Q8GYE0
Coordinates (TAIR10) chr3:-:19354117..19356910
Molecular Weight (calculated) 43769.40 Da
IEP (calculated) 7.42
GRAVY (calculated) -0.14
Length 398 amino acids
Sequence (TAIR10)
(BLAST)
001: MEIEEASRES GHVVCGSWIR RPKKVNWVLI AKASKRRGSS VSSPALLNIF SFDPITASLS SSPLATHTLK DSDGDPVAVS VHPGGDYFVC STSKGGCKLF
101: ELVGGATGIT ILAKELLPLQ NAGLQKCMAF SFDGSKLAVG GVDGCLRIME WPNLSVILDE PKAHKSIRDM DFSLDSEFLA TTSTDGSARI WKAEDGFPLS
201: TLERSGDENI ELCRFSKDGT KPFLFCAAQR GDTPMVNVYD ISTWKKLGFK KLSRKTASTM AVSLDGKYIA LGGKDGDVSV AEVKTMEIYH YSKRLHLGQS
301: IASLEFCPSE RVMLTTSSEW GEMVTKLTVP KEWKEWQIYA LLFCLFMASV IAAYVFFENS DSFWKLPMGK DQKRPKISLF GGSSSTPSED HSRWNLDL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)