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AT3G52150.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: chloroplast RNA-binding protein 33 (TAIR:AT3G52380.1); Has 994423 Blast hits to 498842 proteins in 22080 species: Archae - 21562; Bacteria - 603611; Metazoa - 187119; Fungi - 27426; Plants - 59617; Viruses - 70898; Other Eukaryotes - 24190 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IQWCeggNOG:ENOG410YC5SEMBL:AY070427EMBL:AY133746EMBL:CP002686EnsemblPlants:AT3G52150EnsemblPlants:AT3G52150.1
EnsemblPlants:AT3G52150.2entrez:824379Gene3D:3.30.70.330GeneID:824379GO:GO:0000166GO:GO:0003676GO:GO:0009507
GO:GO:0009535GO:GO:0009570GO:GO:0009579GO:GO:0009941Gramene:AT3G52150.1Gramene:AT3G52150.2hmmpanther:PTHR24012
InterPro:IPR000504InterPro:IPR012677KEGG:ath:AT3G52150KO:K13126OMA:VMYDKYTPfam:PF00076Pfscan:PS50102
PhylomeDB:Q8VYM4PRO:PR:Q8VYM4PROSITE:PS50102Proteomes:UP000006548RefSeq:NP_001030841.1RefSeq:NP_566958.3SMART:SM00360
SMR:Q8VYM4STRING:3702.AT3G52150.1SUPFAM:SSF54928TAIR:AT3G52150UniGene:At.3215UniProt:Q8VYM4
Coordinates (TAIR10) chr3:+:19342074..19343090
Molecular Weight (calculated) 27749.90 Da
IEP (calculated) 9.50
GRAVY (calculated) -0.26
Length 253 amino acids
Sequence (TAIR10)
(BLAST)
001: MATFLTNVVS IKPTIFSFQS ESFTPLHTRV NVFSSKPFPS LAGTFSRSSR TRFIPYAVTE TEEKPAALDP SSEAARRVYI GNIPRTVTNE QLTKLVEEHG
101: AVEKVQVMYD KYSGRSRRFG FATMKSVEDA NAVVEKLNGN TVEGREIKVN ITEKPIASSP DLSVLQSEDS AFVDSPYKVY VGNLAKTVTK EMLENLFSEK
201: GKVVSAKVSR VPGTSKSTGF GFVTFSSEED VEAAIVALNN SLLEGQKIRV NKA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)