AT3G52140.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.985 What is SUBAcon? |
|||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||
| Description (TAIR10) | protein_coding : tetratricopeptide repeat (TPR)-containing protein | ||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||
| Computational Description (TAIR10) |
tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G01320.2); Has 11101 Blast hits to 3590 proteins in 410 species: Archae - 113; Bacteria - 3115; Metazoa - 4880; Fungi - 1415; Plants - 408; Viruses - 9; Other Eukaryotes - 1161 (source: NCBI BLink). | ||||||||||||||||
| Protein Annotations |
|
||||||||||||||||
| Coordinates (TAIR10) | chr3:+:19333232..19341295 | ||||||||||||||||
| Molecular Weight (calculated) | 153274.00 Da | ||||||||||||||||
| IEP (calculated) | 6.33 | ||||||||||||||||
| GRAVY (calculated) | -0.41 | ||||||||||||||||
| Length | 1403 amino acids | ||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAGKSNKSKA KRAAQSTTTN STTDVKSDAP APPVAATVPA TAPVTAAAAP VATAAAPVTA PDNGTLTAVD SAVPEANEVA PTIPKADESE SQVENNDAQP 0101: KQGELRLYPV SVKTQSGGKM ELQLNPGDSV MDIRQFLLDA PETCYFTCYE LLLRNKDGET HHLEDYNEIS EVADITIGGC SLEMVAALYD DRSIRAHVHR 0201: ARDLLSLSTL HSSLSTTLAL QYDAALNKVQ NPGDKPKSDV PELECLGFME DVPGSLKKLI NSTSEEIRSV ENIVFSSFNP PPSHRRLVGD LIYLDVVTLE 0301: GNKYCITGTT KTFYVNSSSG NILDPRPSKS GFEAATLIGL LQKLSSKFKK AFREVMEKKA SAHPFENVQS LLPPHSWLRT YPVPDHKRDA ARAEEALTIS 0401: YGSELIGMQR DWNEELQSCR EFPHTSPQER ILRDRALYKV SSDFVDAALN GAIGVISRCI PPINPTDPEC LHMYVHNNIF FSFAVDADIE QLSKKRPSNQ 0501: MTEKVSSSEK VSCTEGTCDN EEHNNCNEAP LVENEQATYA SANNDLKGTK LYQEADVPGL YNLAMAIIDY RGHRVVAQSV LPGILQGDKS DALLYGSVDN 0601: GKKICWNEDF HAKVLEAAKL LHIKEHSVID ASETVFKLAA PVECKGIVGS DNRHYLLDLM RVTPRDANYT GPESRFCVLR PELITSFCQA ESLEKSKFKT 0701: KADEGGDDSS NVSADTSKVG DALIDGEANG ASNSDQKSIS DKQNTTAEDY AAGSSESSKS CDQIAFNPNV FTDFTLGGNQ EEIAADEENV KKVSSYLVDV 0801: VLPKFIEDLC TLEVSPMDGQ TLTEALHAHG VNVRYIGRVA NGVKHLPHLW DLCLNEITVR SAKHILKDIL RDIEDHDIGS AVSHFLNCFF GNYQTAGGKA 0901: SANSSTAKNQ KKDQPITKKG QGRGKGKASS KKSFSSYMMV DSNILWSDIQ EFAKAKYEFE LPELSRTTAK KVSVLRNLCQ KVGVSIAARK YDFSANTPFE 1001: TSDILDLRPV IKHSVPVCSE AKDLVEMGKV QLAEGMLSES YTFFSEAFSI LQQVTGPMHR EVANCCRYLA MVLYHAGDMA GAIMQQHKEL IINERCLGLD 1101: HPDTAHSYGN MALFYHGLNQ TELALQNMGR ALLLLGLSSG PDHPDVAATF INVAMMYQDM GKMDTALRYL QEALKKNERL LGPEHIQTAV CYHALAIAFN 1201: CMGAFKLSHQ HEKKTYDILV KQLGDDDSRT RDSLNWMKTF KMRELQMTAQ KQKGQAANAA NTQKAIDLLK AHPDLIHAFQ NAAATGRTNA LNSAVLGETQ 1301: PRGRGFDERA ARAAAEVRKK AAAKGLLVRP QGGVPVQAMP PLSQLQNMIN TATVSSEKGG ENGEAKVQEK KESSENGKTE NLAPAGLGAG LTSLDKKKQK 1401: AKK |
||||||||||||||||
| See Also |
|
||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)