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AT3G52140.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : tetratricopeptide repeat (TPR)-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G01320.2); Has 11101 Blast hits to 3590 proteins in 410 species: Archae - 113; Bacteria - 3115; Metazoa - 4880; Fungi - 1415; Plants - 408; Viruses - 9; Other Eukaryotes - 1161 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT3G52140EnsemblPlants:AT3G52140.1entrez:824378hmmpanther:PTHR12601hmmpanther:PTHR12601:SF6Pfam:PF05303Pfam:PF12807
Pfam:PF13236Pfam:PF13424Pfam:PF15044Pfscan:PS50005Pfscan:PS50293SUPFAM:0049393
Coordinates (TAIR10) chr3:+:19333232..19341295
Molecular Weight (calculated) 153274.00 Da
IEP (calculated) 6.33
GRAVY (calculated) -0.41
Length 1403 amino acids
Sequence (TAIR10)
(BLAST)
0001: MAGKSNKSKA KRAAQSTTTN STTDVKSDAP APPVAATVPA TAPVTAAAAP VATAAAPVTA PDNGTLTAVD SAVPEANEVA PTIPKADESE SQVENNDAQP
0101: KQGELRLYPV SVKTQSGGKM ELQLNPGDSV MDIRQFLLDA PETCYFTCYE LLLRNKDGET HHLEDYNEIS EVADITIGGC SLEMVAALYD DRSIRAHVHR
0201: ARDLLSLSTL HSSLSTTLAL QYDAALNKVQ NPGDKPKSDV PELECLGFME DVPGSLKKLI NSTSEEIRSV ENIVFSSFNP PPSHRRLVGD LIYLDVVTLE
0301: GNKYCITGTT KTFYVNSSSG NILDPRPSKS GFEAATLIGL LQKLSSKFKK AFREVMEKKA SAHPFENVQS LLPPHSWLRT YPVPDHKRDA ARAEEALTIS
0401: YGSELIGMQR DWNEELQSCR EFPHTSPQER ILRDRALYKV SSDFVDAALN GAIGVISRCI PPINPTDPEC LHMYVHNNIF FSFAVDADIE QLSKKRPSNQ
0501: MTEKVSSSEK VSCTEGTCDN EEHNNCNEAP LVENEQATYA SANNDLKGTK LYQEADVPGL YNLAMAIIDY RGHRVVAQSV LPGILQGDKS DALLYGSVDN
0601: GKKICWNEDF HAKVLEAAKL LHIKEHSVID ASETVFKLAA PVECKGIVGS DNRHYLLDLM RVTPRDANYT GPESRFCVLR PELITSFCQA ESLEKSKFKT
0701: KADEGGDDSS NVSADTSKVG DALIDGEANG ASNSDQKSIS DKQNTTAEDY AAGSSESSKS CDQIAFNPNV FTDFTLGGNQ EEIAADEENV KKVSSYLVDV
0801: VLPKFIEDLC TLEVSPMDGQ TLTEALHAHG VNVRYIGRVA NGVKHLPHLW DLCLNEITVR SAKHILKDIL RDIEDHDIGS AVSHFLNCFF GNYQTAGGKA
0901: SANSSTAKNQ KKDQPITKKG QGRGKGKASS KKSFSSYMMV DSNILWSDIQ EFAKAKYEFE LPELSRTTAK KVSVLRNLCQ KVGVSIAARK YDFSANTPFE
1001: TSDILDLRPV IKHSVPVCSE AKDLVEMGKV QLAEGMLSES YTFFSEAFSI LQQVTGPMHR EVANCCRYLA MVLYHAGDMA GAIMQQHKEL IINERCLGLD
1101: HPDTAHSYGN MALFYHGLNQ TELALQNMGR ALLLLGLSSG PDHPDVAATF INVAMMYQDM GKMDTALRYL QEALKKNERL LGPEHIQTAV CYHALAIAFN
1201: CMGAFKLSHQ HEKKTYDILV KQLGDDDSRT RDSLNWMKTF KMRELQMTAQ KQKGQAANAA NTQKAIDLLK AHPDLIHAFQ NAAATGRTNA LNSAVLGETQ
1301: PRGRGFDERA ARAAAEVRKK AAAKGLLVRP QGGVPVQAMP PLSQLQNMIN TATVSSEKGG ENGEAKVQEK KESSENGKTE NLAPAGLGAG LTSLDKKKQK
1401: AKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)