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AT3G52030.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.512
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box family protein with WD40/YVTN repeat doamin
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box family protein with WD40/YVTN repeat doamin; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), WD40 repeat-like-containing domain (InterPro:IPR011046), F-box domain, Skp2-like (InterPro:IPR022364), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); Has 641 Blast hits to 623 proteins in 165 species: Archae - 0; Bacteria - 72; Metazoa - 330; Fungi - 119; Plants - 62; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).
Protein Annotations
BioGrid:9684eggNOG:ENOG410IGSMeggNOG:ENOG4111PY4EMBL:AL049711EMBL:CP002686EnsemblPlants:AT3G52030EnsemblPlants:AT3G52030.1
entrez:824366ExpressionAtlas:Q9SV01Gene3D:2.130.10.10Gene3D:3.80.10.10GeneID:824366Genevisible:Q9SV01hmmpanther:PTHR22844
hmmpanther:PTHR22844:SF149HOGENOM:HOG000006186InParanoid:Q9SV01InterPro:IPR001680InterPro:IPR001810InterPro:IPR015943InterPro:IPR017986
InterPro:IPR032675iPTMnet:Q9SV01OMA:KGLCMRYPaxDb:Q9SV01Pfam:PF00646Pfam:Q9SV01Pfscan:PS50181
PhylomeDB:Q9SV01PIR:T49082PRIDE:Q9SV01PRO:PR:Q9SV01PROSITE:PS50181ProteinModelPortal:Q9SV01Proteomes:UP000006548
RefSeq:NP_190771.2SMART:SM00256SMART:SM00320SMR:Q9SV01STRING:3702.AT3G52030.1SUPFAM:SSF50978SUPFAM:SSF81383
TAIR:AT3G52030UniGene:At.3207UniGene:At.53898UniProt:Q9SV01
Coordinates (TAIR10) chr3:+:19301872..19304227
Molecular Weight (calculated) 50969.00 Da
IEP (calculated) 9.20
GRAVY (calculated) -0.16
Length 454 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRTETGDES SARKMRRKVP TSIESLDADI LCIIFSFLDL FDLVHCTVVC NSWNAVIKRL KLLQASCRKM HHLGSDSPSS STSLDRPAEI DVEDFAMKHH
101: KMALLRGRIE IERWEAHSHR VSQCRMKKGL LLTGVGDKVM RLWSLKSYKC MEEYSLPDAS SLIDFDFDES KKLEVVSLAW EYFDSVVVVV VEIVGLVGTR
201: ISIWRRNGQR SIFPSRAGTF PKGLCMRYID PEAVVGCEDG TARVFDMYSK TCSQIIRTQG GPITCLSLSD NQLFLSGSSL GRVTVSDPLM DQPVATLKST
301: ITAGGIQTIC FNQGTNLAFI GTTGGYVSCW DLRKMDRLWE KRVSPNVVYS IQQLRNDTSV MVAGGIDGVL RMIDQKSGRV LSRVIMDDKF STTSTRNNQV
401: VIEKRRGKRV SQDMEIDKIE RKVRPQISCI AMGMKKMVTA HNGKCISVWK FNLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)