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AT3G51950.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.998
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, zinc ion binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G63450.3); Has 248 Blast hits to 214 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 5; Plants - 227; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
EC:3.1.-.-eggNOG:ENOG410INQBeggNOG:ENOG410YCDXEMBL:AK316715EMBL:AL049711EMBL:AY080846EMBL:AY088484
EMBL:AY150500EMBL:CP002686EnsemblPlants:AT3G51950EnsemblPlants:AT3G51950.1EnsemblPlants:AT3G51950.2entrez:824358Gene3D:3.30.70.330
Gene3D:4.10.1000.10GeneID:824358Genevisible:Q9SV09GO:GO:0000166GO:GO:0003677GO:GO:0003723GO:GO:0004518
GO:GO:0046872Gramene:AT3G51950.1Gramene:AT3G51950.2hmmpanther:PTHR24009hmmpanther:PTHR24009:SF3HOGENOM:HOG000242520InParanoid:Q9SV09
InterPro:IPR000504InterPro:IPR000571InterPro:IPR012677iPTMnet:Q9SV09KEGG:ath:AT3G51950OMA:LAHHFMTPaxDb:Q9SV09
Pfam:PF00076Pfam:PF00642Pfam:Q9SV09Pfscan:PS50102Pfscan:PS50103PhylomeDB:Q9SV09PIR:T49074
PRIDE:Q9SV09PRO:PR:Q9SV09PROSITE:PS50102PROSITE:PS50103ProteinModelPortal:Q9SV09Proteomes:UP000006548RefSeq:NP_001030840.1
RefSeq:NP_190763.1SMART:SM00356SMART:SM00360SMR:Q9SV09SUPFAM:SSF54928SUPFAM:SSF90229TAIR:AT3G51950
UniGene:At.43143UniProt:Q9SV09
Coordinates (TAIR10) chr3:-:19278244..19280407
Molecular Weight (calculated) 59792.50 Da
IEP (calculated) 6.94
GRAVY (calculated) -0.53
Length 540 amino acids
Sequence (TAIR10)
(BLAST)
001: MDGYEATRIV LSRIQSLDPE NASKIMGLLL LQDHGEKEMI RLAFGPETLV HSVIVKAKKE LGLMNCSRSP WSHQDELISP KNNRGSSLNP ASLPFYANGG
101: RSSRDLTNDF ELMDDMNSRS TDFLGSVHAR SGSCVLDGLG YGGDSDLGFG GVPCSYFARG FCKNGASCRF VHSDGGADLV GSPSRIELLR SNSVPPRLAH
201: HFMTRSSLPS FSTKGVNLQQ NDVQRAAAAL MIGDELQKLG RWRPERIDLS AMACPASRQI YLTFPADSRF REEDVSNYFS TFGPVQDVRI PYQQKRMFGF
301: VTFVYPETVK SILAKGNPHF VCDSRVLVKP YKEKGKVPDK YRTNQTTERE LSPTGLDSSP RDVLGGRGFY NNTQDVLWRS KFEEEILELQ SRRLMNLQLL
401: DVKKHFQLNS PTNIHSPNPF SQSLISPRPL SVIKREYDGG EKGKGSSKEG SDDDTMNLPE RLEDSLPDSP FASPAHHLLL FADSADNNGS DLWSPSSDND
501: DNSTPSTLSD SFNSFNYQMP RLPAIGMLPG RGGPTCRVGI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)