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AT3G51920.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.998
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : calmodulin 9
Curator
Summary (TAIR10)
encodes a divergent member of calmodulin, which is an EF-hand family of Ca2+-binding proteins. This gene is expressed in leaves, flowers and siliques. The gene functionally complements yeast calmodulin 1 (CAM1) but only when selected against the plasmid harboring wild-type yeast sequences. Also the protein does not form formed a complex with a basic amphiphilic helical peptide in the presence of Ca2+ in vitro. Authors suggest that this gene may represent a Ca2+-binding sensor protein that interacts with a more limited set of target proteins than do more conventional CaM isoforms. Mutations in this gene alter plant responses to abiotic stress and abscisic acid.
Computational
Description (TAIR10)
calmodulin 9 (CAM9); FUNCTIONS IN: calcium ion binding; INVOLVED IN: response to salt stress, response to water deprivation, detection of calcium ion, calcium-mediated signaling, response to abscisic acid stimulus; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin 1 (TAIR:AT5G37780.1); Has 22298 Blast hits to 16833 proteins in 1534 species: Archae - 0; Bacteria - 90; Metazoa - 8769; Fungi - 5904; Plants - 4665; Viruses - 0; Other Eukaryotes - 2870 (source: NCBI BLink).
Protein Annotations
BioGrid:9673eggNOG:COG5126eggNOG:KOG0027EMBL:AF178075EMBL:AF380635EMBL:AL049711EMBL:AY054133
EMBL:CP002686EnsemblPlants:AT3G51920EnsemblPlants:AT3G51920.1entrez:824355Gene3D:1.10.238.10GeneID:824355Genevisible:Q9S744
GO:GO:0005509GO:GO:0005513GO:GO:0005634GO:GO:0005829GO:GO:0009414GO:GO:0009651GO:GO:0009737
GO:GO:0019722Gramene:AT3G51920.1hmmpanther:PTHR23050hmmpanther:PTHR23050:SF177HOGENOM:HOG000233018InParanoid:Q9S744IntAct:Q9S744
InterPro:IPR002048InterPro:IPR011992InterPro:IPR018247KEGG:ath:AT3G51920KO:K13448MINT:MINT-8069672OMA:YIMAQNT
PaxDb:Q9S744Pfam:PF13499Pfam:Q9S744Pfscan:PS50222PhylomeDB:Q9S744PIR:T49071PRIDE:Q9S744
PRO:PR:Q9S744PROSITE:PS00018PROSITE:PS50222ProteinModelPortal:Q9S744Proteomes:UP000006548RefSeq:NP_190760.1scanprosite:PS00018
SMART:SM00054SMR:Q9S744STRING:3702.AT3G51920.1SUPFAM:SSF47473TAIR:AT3G51920tair10-symbols:ATCML9tair10-symbols:CAM9
tair10-symbols:CML9UniGene:At.24807UniProt:Q9S744
Coordinates (TAIR10) chr3:-:19268178..19269314
Molecular Weight (calculated) 17037.10 Da
IEP (calculated) 3.96
GRAVY (calculated) -0.33
Length 151 amino acids
Sequence (TAIR10)
(BLAST)
001: MADAFTDEQI QEFYEAFCLI DKDSDGFITK EKLTKVMKSM GKNPKAEQLQ QMMSDVDIFG NGGITFDDFL YIMAQNTSQE SASDELIEVF RVFDRDGDGL
101: ISQLELGEGM KDMGMKITAE EAEHMVREAD LDGDGFLSFH EFSKMMIAAS Y
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)