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AT3G51760.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.998
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF688)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF688); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); Has 38 Blast hits to 38 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J8AEeggNOG:ENOG4111CKQEMBL:AY800626EMBL:AY954851EMBL:CP002686EnsemblPlants:AT3G51760EnsemblPlants:AT3G51760.1
EnsemblPlants:AT3G51760.2entrez:824339ExpressionAtlas:Q5Q0C5GeneID:824339Gramene:AT3G51760.1Gramene:AT3G51760.2hmmpanther:PTHR33671
hmmpanther:PTHR33671:SF1HOGENOM:HOG000139354InterPro:IPR007789KEGG:ath:AT3G51760OMA:LTMESTEPfam:PF05097PhylomeDB:Q5Q0C5
Proteomes:UP000006548RefSeq:NP_001118821.1RefSeq:NP_190744.2TAIR:AT3G51760UniGene:At.51226UniProt:Q5Q0C5
Coordinates (TAIR10) chr3:-:19198541..19199405
Molecular Weight (calculated) 28966.30 Da
IEP (calculated) 7.61
GRAVY (calculated) -0.61
Length 259 amino acids
Sequence (TAIR10)
(BLAST)
001: MILYLTVEEM MDINRSRRLN FNAPFLSTKR HVTQEKLPGQ FPEASVPFCW ETAPGMPKNS SHLKNDAESE TPRLKLPPGR LKVQVTGKND DLDDASESLT
101: PAKLLHMKKR NNQEYFHQTN QDAVDVLSLT QAIDMVELPK DSVSESDDDR SSVGGDSNGY LTMESTERSE DMSPSYIIER FLPDAAALAA VTSAASQRRK
201: KKLSYLSGET VRQSCFSPKA CGLHVLLPWS TKHRICGVKN AFSPSSHVHL QPKFITKDN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)