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AT3G51730.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:15539469 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : saposin B domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
saposin B domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lipid metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Saposin B (InterPro:IPR008139), Saposin-like (InterPro:IPR011001), Saposin-like type B, 1 (InterPro:IPR007856), Saposin-like type B, 2 (InterPro:IPR008138); BEST Arabidopsis thaliana protein match is: saposin B domain-containing protein (TAIR:AT5G01800.1); Has 951 Blast hits to 460 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 738; Fungi - 0; Plants - 102; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XSI5eggNOG:KOG1340EMBL:AL132968EMBL:AY088736EMBL:AY125518EMBL:AY143821EMBL:CP002686
EnsemblPlants:AT3G51730EnsemblPlants:AT3G51730.1entrez:824336Gene3D:1.10.225.10GeneID:824336GO:GO:0005773GO:GO:0006629
Gramene:AT3G51730.1hmmpanther:PTHR11480HOGENOM:HOG000237535InterPro:IPR007856InterPro:IPR008138InterPro:IPR008139InterPro:IPR011001
KEGG:ath:AT3G51730KO:K12382OMA:CEEYVTDPfam:PF03489Pfam:PF05184Pfscan:PS50015PhylomeDB:Q9SCT5
PIR:T46069PROSITE:PS50015Proteomes:UP000006548RefSeq:NP_190741.1SMART:SM00741SMR:Q9SCT5STRING:3702.AT3G51730.1
SUPFAM:SSF47862TAIR:AT3G51730UniGene:At.43655UniProt:Q9SCT5
Coordinates (TAIR10) chr3:+:19186970..19188436
Molecular Weight (calculated) 24099.30 Da
IEP (calculated) 4.74
GRAVY (calculated) 0.05
Length 213 amino acids
Sequence (TAIR10)
(BLAST)
001: MGLKAGTFVL LLLGLILVSD ARSFVDSTIS EKVSNKEDVC TLCEEYVTDA LSYLEKNVTQ AEIIEDLHDR CSQLRGYSQQ CISLVDYYVP LFFLQLESFQ
101: PHYFCKRMNL CGKVVALVEE ARQDSCGVCH RTVSEILIKL QDPDTQLDIV ELLIKGCKSL KNYEKKCKTL VFEYGPLILV NAEEFLVKND VCTLLRACPP
201: EKSVLRQPEL ADS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)