AT3G51710.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.550 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : D-mannose binding lectin protein with Apple-like carbohydrate-binding domain | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain; FUNCTIONS IN: sugar binding; INVOLVED IN: recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Apple-like (InterPro:IPR003609), S-locus glycoprotein (InterPro:IPR000858); BEST Arabidopsis thaliana protein match is: D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (TAIR:AT5G03700.1); Has 1533 Blast hits to 1511 proteins in 55 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 1529; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:19182484..19183996 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 53233.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.76 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.16 | ||||||||||||||||||||||||||||||||||||
| Length | 476 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMMKFYTFTF LICLFSKLQG HCKSDISLGN SLTLTSPLEY TPGFMGKAYI IETESSSTRE PGFKAALTME SSDKDDGRYL CSLQIFLGDV RVWSSGHYSK 101: MYVSSKCIIE LTKDGDLRLK SSYKHVGWRS GTSGQGVERL EIQSTGNLVL VDAKNLIKWQ SFNFPTDVML SGQRLDVATQ LTSFPNDSTL FYSFEVLRDK 201: IALFLNLNKL KYSYWEYKPR EKNTTVNFVR LGLKGLDLFD DNSRIIGRIE QPLIRFLALG NRTGNLGLYS YKPEKGKFEA TFQAVSDTCD LPVACKPYGI 301: CTFSKSCSCI KVVSNGYCSS INGEEAVSVK RLCDHEMVEL NGVTTVLRNG TQVRNISKER CEELCKKDCE CGAASYSVSE ESCVMYGIVM GVKQIERVSG 401: LSYMVKIPKG VRLSDEKSNV RKWVVGLVGG IDGFVILLLI SGFAFYFIRK RRKSLLLPPP PPPPPPLSQQ PANTDS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)