suba logo
AT3G51670.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plasma membrane 0.918
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), GOLD (InterPro:IPR009038), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (TAIR:AT4G09160.1); Has 2976 Blast hits to 2970 proteins in 235 species: Archae - 0; Bacteria - 0; Metazoa - 1096; Fungi - 761; Plants - 842; Viruses - 0; Other Eukaryotes - 277 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRSQeggNOG:KOG1471EMBL:AF419595EMBL:AJ238803EMBL:AL132968EMBL:BT002309EMBL:CP002686
EnsemblPlants:AT3G51670EnsemblPlants:AT3G51670.1entrez:824330Gene3D:3.40.525.10GeneID:824330Genevisible:Q9SCU1GO:GO:0005737
GO:GO:0005886GO:GO:0006810GO:GO:0007049GO:GO:0008289GO:GO:0016021GO:GO:0051301Gramene:AT3G51670.1
hmmpanther:PTHR23324hmmpanther:PTHR23324:SF57HOGENOM:HOG000238518InParanoid:Q9SCU1InterPro:IPR001251InterPro:IPR009038InterPro:IPR011074
iPTMnet:Q9SCU1KEGG:ath:AT3G51670OMA:MYERIFGPaxDb:Q9SCU1Pfam:PF00650Pfam:PF03765Pfam:Q9SCU1
Pfscan:PS50191Pfscan:PS50866PhylomeDB:Q9SCU1PIR:T46063PRIDE:Q9SCU1PRO:PR:Q9SCU1PROSITE:PS50191
PROSITE:PS50866ProteinModelPortal:Q9SCU1Proteomes:UP000006548RefSeq:NP_190735.1SMART:SM00516SMART:SM01100SMR:Q9SCU1
STRING:3702.AT3G51670.1SUPFAM:0041713SUPFAM:SSF101576SUPFAM:SSF46938SUPFAM:SSF52087TAIR:AT3G51670UniGene:At.426
UniProt:Q9SCU1
Coordinates (TAIR10) chr3:+:19168912..19170848
Molecular Weight (calculated) 46512.70 Da
IEP (calculated) 8.63
GRAVY (calculated) -0.45
Length 409 amino acids
Sequence (TAIR10)
(BLAST)
001: MDASLSPFDH QKTQNTEPKK SFITSLITLR SNNIKEDTYF VSELKPTEQK SLQELKEKLS ASSSKASSMW GVSLLGGDDK ADVILLKFLR ARDFKVADSL
101: RMLEKCLEWR EEFKAEKLTE EDLGFKDLEG KVAYMRGYDK EGHPVCYNAY GVFKEKEMYE RVFGDEEKLN KFLRWRVQVL ERGVKMLHFK PGGVNSIIQV
201: TDLKDMPKRE LRVASNQILS LFQDNYPELV ATKIFINVPW YFSVIYSMFS PFLTQRTKSK FVMSKEGNAA ETLYKFIRPE DIPVQYGGLS RPTDSQNGPP
301: KPASEFSIKG GEKVNIQIEG IEGGATITWD IVVGGWDLEY SAEFVPNAEE SYAIVVEKPK KMKATDEAVC NSFTTVEAGK LILSVDNTLS RKKKVAAYRY
401: TVRKSTTTV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)