suba logo
AT3G51620.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PAP/OAS1 substrate-binding domain superfamily
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PAP/OAS1 substrate-binding domain superfamily; BEST Arabidopsis thaliana protein match is: nucleotidyltransferases (TAIR:AT3G61690.1); Has 270 Blast hits to 218 proteins in 57 species: Archae - 0; Bacteria - 2; Metazoa - 18; Fungi - 29; Plants - 185; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).
Protein Annotations
EMBL:CP002686EnsemblPlants:AT3G51620EnsemblPlants:AT3G51620.1entrez:824325ExpressionAtlas:F4J4G3GeneID:824325Gramene:AT3G51620.1
hmmpanther:PTHR23092hmmpanther:PTHR23092:SF30iPTMnet:F4J4G3KEGG:ath:AT3G51620PRIDE:F4J4G3ProteinModelPortal:F4J4G3Proteomes:UP000006548
RefSeq:NP_190730.2SUPFAM:SSF81301SUPFAM:SSF81631TAIR:AT3G51620UniGene:At.660UniProt:F4J4G3
Coordinates (TAIR10) chr3:+:19143859..19147891
Molecular Weight (calculated) 84744.90 Da
IEP (calculated) 5.71
GRAVY (calculated) -0.68
Length 755 amino acids
Sequence (TAIR10)
(BLAST)
001: MAADLDDLEE ESSSSLSPPL LPPPRSPLNQ PELWMRVEEA TREIIEQVHP TLVSEDRRRD VILYVQKLIR MTLGCEVHSF GSVPLKTYLP DGDIDLTAFG
101: GLYHEEELAA KVFAVLEREE HNLSSQFVVK DVQLIRAEVK LVKCLVQNIV VDISFNQIGG ICTLCFLEKV LYKFLDYFSK FDWDSYCISL NGPVCLSSLP
201: DIVVETPENG GEDLLLTSEF LKECLEMYSV PSRGFETNPR GFQSKHLNIV DPLKETNNLG RSVSKGNFYR IRSAFTYGAR KLGQLFLQSD EAISSELRKF
301: FSNMLLRHGS GQRPDVHDAI PFLRYNRYNA ILPASNHFQE GQVVNESESS SSSGATGNGR HDQEDSLDAG VSIPSTTGPD LSGSPGETVP SVSEERFSGD
401: AKDLATLRIQ KLEISDDAMK SPCLSDKESD SPLNGKHHSF NQMRNGEVLN GNGVGKQQEN SWHTGSRRVK DIHINENENE HVGYEDLPFA SAVPWPQEDM
501: HLHYSGHCVS GTPNMLSDLS GDYESQLNSL RFGRWWFDYV QNGPMSPLSP PGLPQLPNNN SWEVMRHALP FRRNAPTPVN ANGVVPRQVF FHVNPQMIPG
601: PGFGIEELPK PRGTGTYFPN ANHYRDRPFS PRGRNSHQAR SPRNNGRSMS QAHSEMNFPD RNTRERQLHY PNQTNGSCDM SHTDSLDSFP DTNGSTNHPY
701: EKAPDFRPTE PLPVEVLSPP EDSKPRDSIE GHHNRPHRPK PRPSSTQEER DVHVG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)