suba logo
AT3G51320.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G62890.1); Has 32632 Blast hits to 12262 proteins in 174 species: Archae - 0; Bacteria - 0; Metazoa - 25; Fungi - 25; Plants - 32307; Viruses - 0; Other Eukaryotes - 275 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AK226647EMBL:AL132980EMBL:CP002686EnsemblPlants:AT3G51320EnsemblPlants:AT3G51320.1
entrez:824295GeneID:824295Genevisible:Q0WVU0Gramene:AT3G51320.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF587HOGENOM:HOG000115632
InParanoid:Q0WVU0InterPro:IPR002885KEGG:ath:AT3G51320OMA:RDIASHNPaxDb:Q0WVU0Pfam:PF01535Pfam:PF12854
Pfam:PF13041Pfam:Q0WVU0Pfscan:PS51375PhylomeDB:Q0WVU0PIR:T45763PRIDE:Q0WVU0PRO:PR:Q0WVU0
PROSITE:PS51375ProteinModelPortal:Q0WVU0Proteomes:UP000006548RefSeq:NP_190700.2SMR:Q0WVU0STRING:3702.AT3G51320.1TAIR:AT3G51320
TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.53887UniProt:Q0WVU0
Coordinates (TAIR10) chr3:-:19049853..19051445
Molecular Weight (calculated) 58988.50 Da
IEP (calculated) 8.20
GRAVY (calculated) 0.00
Length 530 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKASSIRQF VTSRFIVPGT GLLKGFKLVE DSNSITHLFQ VHARLITSGN FWDSSWAIRL LKSSSRFGDS SYTVSIYRSI GKLYCANPVF KAYLVSSSPK
101: QALGFYFDIL RFGFVPDSYT FVSLISCIEK TCCVDSGKMC HGQAIKHGCD QVLPVQNSLM HMYTCCGALD LAKKLFVEIP KRDIVSWNSI IAGMVRNGDV
201: LAAHKLFDEM PDKNIISWNI MISAYLGANN PGVSISLFRE MVRAGFQGNE STLVLLLNAC GRSARLKEGR SVHASLIRTF LNSSVVIDTA LIDMYGKCKE
301: VGLARRIFDS LSIRNKVTWN VMILAHCLHG RPEGGLELFE AMINGMLRPD EVTFVGVLCG CARAGLVSQG QSYYSLMVDE FQIKPNFGHQ WCMANLYSSA
401: GFPEEAEEAL KNLPDEDVTP ESTKWANLLS SSRFTGNPTL GESIAKSLIE TDPLNYKYYH LLMNIYSVTG RWEDVNRVRE MVKERKIGRI PGCGLVDLKE
501: IVHGLRLGCK EAEKVFTETS LEKCYSDSPS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)