suba logo
AT3G51310.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
golgi 1.000
ASURE: golgi
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : VPS35 homolog C
Curator
Summary (TAIR10)
Homolog of yeast retromer subunit VPS35. Part of a retromer-like protein complex involved in endosome to lysosome protein transport.
Computational
Description (TAIR10)
VPS35 homolog C (VPS35C); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport, endosome to lysosome transport, retrograde transport, endosome to Golgi; LOCATED IN: microsome, retromer complex, membrane, multivesicular body; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein 35 (InterPro:IPR005378); BEST Arabidopsis thaliana protein match is: VPS35 homolog A (TAIR:AT2G17790.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XNXCeggNOG:KOG1107EMBL:AB368490EMBL:AL132980EMBL:CP002686EnsemblPlants:AT3G51310EnsemblPlants:AT3G51310.1
entrez:824294GeneID:824294Genevisible:A8R7K9GO:GO:0005770GO:GO:0005771GO:GO:0005794GO:GO:0006886
GO:GO:0008565GO:GO:0016020GO:GO:0030904GO:GO:0031902GO:GO:0042147GO:GO:0043231Gramene:AT3G51310.1
hmmpanther:PTHR11099hmmpanther:PTHR11099:SF1HOGENOM:HOG000196946InParanoid:A8R7K9InterPro:IPR005378KEGG:ath:AT3G51310OMA:YLLCTIG
PANTHER:PTHR11099PaxDb:A8R7K9Pfam:A8R7K9Pfam:PF03635PhylomeDB:A8R7K9PIR:T45762PIRSF:PIRSF009375
PRIDE:A8R7K9PRO:PR:A8R7K9ProteinModelPortal:A8R7K9Proteomes:UP000006548RefSeq:NP_190699.3SMR:A8R7K9STRING:3702.AT3G51310.1
TAIR:AT3G51310tair10-symbols:VPS35CUniGene:At.35404UniProt:A8R7K9
Coordinates (TAIR10) chr3:-:19044634..19049321
Molecular Weight (calculated) 89409.70 Da
IEP (calculated) 4.98
GRAVY (calculated) -0.17
Length 790 amino acids
Sequence (TAIR10)
(BLAST)
001: MIADDDEKWL AAAIAAVKQN AFYMQRAIDS NNLKDALKFS AQMLSELRTS KLSPHKYYEL YMRVFNELGT LEIFFKEETG RGCSIAELYE LVQHAGNILP
101: RLYLLCTIGS VYIKSKDVTA TDILKDLVEM CRAVQHPLRG LFLRSYLAQV TRDKLPSIGS DLEGDGDAHM NALEFVLQNF TEMNKLWVRM QHQGPSREKE
201: KREKERNELR DLVGKNLHVL SQLEGVDLGI YRDTVLPRIL EQVVNCKDEL AQCYLMDCII QVFPDDFHLQ TLDVLLGACP QLQPSVDIKT VLSGLMERLS
301: NYAASSVEAL PNFLQVEAFS KLNYAIGKVV EAQADLPAAA SVTLYLFLLK FTLHVYSDRL DYVDQVLGSC VTQLSATGKL CDDKAAKQIV AFLSAPLEKY
401: NNVVTILKLT NYPLVMEYLD RETNKAMAII LVQSVFKNNT HIATADEVDA LFELAKGLMK DFDGTIDDEI DEEDFQEEQN LVARLVNKLY IDDPEEMSKI
501: IFTVRKHIVA GGPKRLPLTI PPLVFSALKL IRRLRGGDEN PFGDDASATP KRILQLLSET VEVLSDVSAP DLALRLYLQC AQAANNCELE TVAYEFFTKA
601: YLLYEEEISD SKAQVTALRL IIGTLQRMRV FNVENRDTLT HKATGYSARL LRKPDQCRAV YECAHLFWAD ECENLKDGER VVLCLKRAQR IADAVQQMAN
701: ASRGTSSTGS VSLYVELLNK YLYFLEKGNQ QVTGDTIKSL AELIKSETKK VESGAEPFIN STLRYIEFQR QQEDGGMNEK YEKIKMEWFE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)