AT3G51280.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G48850.1); Has 898 Blast hits to 725 proteins in 125 species: Archae - 8; Bacteria - 246; Metazoa - 0; Fungi - 4; Plants - 180; Viruses - 0; Other Eukaryotes - 460 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:19037229..19038781 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47979.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.98 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.57 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 430 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMRDVFRPTK SAPCSPAKPL GISRTQSESF HAIHKVPVGD SPYVRAKNVQ LVEKDPERAI PLFWKAINAG DRVDSALKDM AIVMKQQNRA EEAIEAIKSL 101: RVRCSDQAQE SLDNILLDLY KRCGRLDDQI GLLKHKLFLI QKGLAFNGKR TKTARSQGKK FQVSVEQEAT RLLGNLGWAL MQRDNFVEAE DAYRRALSIA 201: PDNNKMCNLG ICLMKQGRID EAKETLRRVK PAVVDGPRGV DSHLKAYERA QQMLNDLGSE MMRRGGDDKV EQRRLFDAIF GSSSIWQPQP CSEQTVKAKP 301: KPGLSNGDGY GDENVKMSVN PVVVNPLRVD AKPFFSSKLV ISNNEKLKRT RSSSQGMGML SGIGGDHEGE TNTSTRRRLS MEKKATECGL PDNKDFEDAI 401: MAAVLGTETK VDKKRLKVFQ DITLCLNQSL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)