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AT3G51260.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15215502 (2004): plant-type vacuole
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : 20S proteasome alpha subunit PAD1
Curator
Summary (TAIR10)
20S proteosomal alpha subunits. Interacts with SnRK, SKP1/ASK1 during proteasomal binding of an SCF ubiquitin ligase.
Computational
Description (TAIR10)
20S proteasome alpha subunit PAD1 (PAD1); FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: in 10 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, alpha-subunit, conserved site (InterPro:IPR000426), Proteasome, subunit alpha/beta (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: proteasome alpha subunit D2 (TAIR:AT5G66140.1); Has 5855 Blast hits to 5853 proteins in 462 species: Archae - 847; Bacteria - 1; Metazoa - 1895; Fungi - 1451; Plants - 751; Viruses - 0; Other Eukaryotes - 910 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G51260-MONOMERBioCyc:ARA:GQT-713-MONOMERBioGrid:9607EC:3.4.25.1eggNOG:ENOG410XP21eggNOG:KOG0183EMBL:AF043522
EMBL:AL132980EMBL:AY042820EMBL:AY052321EMBL:AY061899EMBL:AY081448EMBL:AY087443EMBL:CP002686
EMBL:X66825EMBL:Z17987EnsemblPlants:AT3G51260EnsemblPlants:AT3G51260.1entrez:824289ExpressionAtlas:P30186Gene3D:3.60.20.10
GeneID:824289Genevisible:P30186GO:GO:0000502GO:GO:0004298GO:GO:0005634GO:GO:0005773GO:GO:0005774
GO:GO:0005819GO:GO:0005829GO:GO:0006511GO:GO:0009507GO:GO:0009524GO:GO:0019773GO:GO:0022626
hmmpanther:PTHR11599hmmpanther:PTHR11599:SF15HOGENOM:HOG000091085InParanoid:P30186IntAct:P30186InterPro:IPR000426InterPro:IPR001353
InterPro:IPR023332InterPro:IPR029055merops:T01.974ncoils:CoilOMA:PYTRIPAPaxDb:P30186Pfam:P30186
Pfam:PF00227Pfam:PF10584Pfscan:PS51475PhylomeDB:P30186PIR:S29240PRIDE:P30186PRO:PR:P30186
PROSITE:PS00388PROSITE:PS51475ProteinModelPortal:P30186Proteomes:UP000006548Reactome:R-ATH-1236978Reactome:R-ATH-174184Reactome:R-ATH-349425
Reactome:R-ATH-5632684Reactome:R-ATH-68949Reactome:R-ATH-69017Reactome:R-ATH-983168RefSeq:NP_190694.1scanprosite:PS00388SMART:SM00948
SMR:P30186STRING:3702.AT3G51260.1SUPFAM:SSF56235TAIR:AT3G51260tair10-symbols:PAD1UniGene:At.19974UniGene:At.67272
UniProt:P30186
Coordinates (TAIR10) chr3:+:19031086..19032746
Molecular Weight (calculated) 27338.70 Da
IEP (calculated) 7.50
GRAVY (calculated) -0.26
Length 250 amino acids
Sequence (TAIR10)
(BLAST)
001: MARYDRAITV FSPDGHLFQV EYALEAVRKG NAAVGVRGTD TVVLAVEKKS TPKLQDSRSA RKIVSLDNHI ALACAGLKAD ARVLINKARI ECQSHRLTLE
101: DPVTVEYITR YIAGLQQKYT QSGGVRPFGL STLIVGFDPY TRIPALYQTD PSGTFSAWKA NATGRNSNSI REFLEKNYKE SAGQETVKLA IRALLEVVES
201: GGKNIEVAVM TREEGVLKQL EEEEIDIIVA EIEAEKAAAE AAKKGPAKET
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)