suba logo
AT3G51250.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.885
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Senescence/dehydration-associated protein-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Senescence/dehydration-associated protein-related; CONTAINS InterPro DOMAIN/s: Senescence/spartin-associated (InterPro:IPR009686); BEST Arabidopsis thaliana protein match is: Senescence/dehydration-associated protein-related (TAIR:AT2G17840.1); Has 288 Blast hits to 288 proteins in 88 species: Archae - 0; Bacteria - 8; Metazoa - 87; Fungi - 46; Plants - 136; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEUSeggNOG:ENOG410ZEPMEMBL:AL132980EMBL:AY050372
EMBL:AY120694EMBL:CP002686EnsemblPlants:AT3G51250EnsemblPlants:AT3G51250.1
entrez:824288GeneID:824288GO:GO:0009506Gramene:AT3G51250.1
hmmpanther:PTHR21068hmmpanther:PTHR21068:SF22HOGENOM:HOG000239897InterPro:IPR009686
KEGG:ath:AT3G51250ncoils:CoilOMA:FSKICDAPfam:PF06911
PhylomeDB:Q9SD22PIR:T45756Proteomes:UP000006548RefSeq:NP_190693.1
TAIR:AT3G51250UniGene:At.869UniProt:Q9SD22
Coordinates (TAIR10) chr3:+:19028227..19030442
Molecular Weight (calculated) 49907.10 Da
IEP (calculated) 7.56
GRAVY (calculated) -0.41
Length 463 amino acids
Sequence (TAIR10)
(BLAST)
001: MNPSHGGDDK QRPAMYPQVD QSIPDNPFAS TNPYVASSPY LYPSLSSHNL GPNLFPDHGD ASNDQSPSAP PQATEEVLIR VPGAILNLID KSYSVELACG
101: DFTIVRIIQG QNIVAVLANV GNEIQWPLTK NEVAAKVDGS HYFFSIHPPK EKGQGSGSDS DDEQGQKSKS KSDDEILNYG LTIASKGQEN VLLVLDQVLR
201: DYSCFTEQRM SEKAKETGEE VLGNSVVADT SPEELKGERK DVVEGQCAAY WTTLAPNVED YTHSTAKMIA SGSGKLIRGI LWCGDVTVER LKKGNEVMKN
301: RLSRAEKEKD VSPETLRRIK RVKRVTQMTE KVATGVLSGV VKVSGFITGS MANSKAGKKL FGLLPGEIVL ASLDGFSKIC DAVEVAGKNV MSTSSTVTTE
401: LVNHRYGTKA AEATNEGLDA AGHAFGTAWV AFKIRKAFNP KNVIKPSSLA KSVSELKAKK GSK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)