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AT3G51180.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Zinc finger C-x8-C-x5-C-x3-H type family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT5G66270.1); Has 424 Blast hits to 373 proteins in 113 species: Archae - 0; Bacteria - 48; Metazoa - 106; Fungi - 68; Plants - 146; Viruses - 3; Other Eukaryotes - 53 (source: NCBI BLink).
Protein Annotations
BioGrid:9599eggNOG:ENOG410JWUPeggNOG:ENOG41104KIEMBL:AL132980EMBL:AY037185EMBL:BT000512EMBL:CP002686
EnsemblPlants:AT3G51180EnsemblPlants:AT3G51180.1entrez:824281GeneID:824281Genevisible:Q94C33GO:GO:0003677GO:GO:0046872
Gramene:AT3G51180.1hmmpanther:PTHR33400hmmpanther:PTHR33400:SF2HOGENOM:HOG000107456InParanoid:Q94C33IntAct:Q94C33InterPro:IPR000571
KEGG:ath:AT3G51180OMA:HETNQYHPaxDb:Q94C33Pfam:Q94C33Pfscan:PS50103PhylomeDB:Q94C33PIR:T45749
PRIDE:Q94C33PRO:PR:Q94C33PROSITE:PS50103ProteinModelPortal:Q94C33Proteomes:UP000006548RefSeq:NP_566947.1SMR:Q94C33
STRING:3702.AT3G51180.1TAIR:AT3G51180UniGene:At.863UniProt:Q94C33
Coordinates (TAIR10) chr3:+:19013720..19016042
Molecular Weight (calculated) 57373.00 Da
IEP (calculated) 10.17
GRAVY (calculated) -0.69
Length 521 amino acids
Sequence (TAIR10)
(BLAST)
001: MNNMKRSKKP RVSWPPGPKL CQVKVFRTED SPANVASQPQ RHSYPSRKPR GPDLPPGFEG NHYAVKPNVS NIPRIKWKRP PPKFSVNDTW LVGCGGGSSE
101: WQNENLRISK VLEAIYPHRS AIPSRPSVSP AVEAECFDDS KTPAIRLTPI EDESESSSEE SSNSKVESGV TANKQGQLET KPLCSTQEQV SGLTGLAPDL
201: SLAASAALTA LMKTKEQGSL VDTELLIKFL SDPKLIKNLI TDTSGKSSET KNQPIVTNIN SATRPVPQPV SAVTASPMAR KPQPVIIPQE HSVAVSRSFT
301: NPERRVSPPK PVNGSISPPK PITGKPSSIP MPVHFHVGIA KEQPQPARFP SSSLPMNLNF HRPPNVFSEP KVIVNPQPQH QPYSAFRTSE MNYVQSSIGL
401: GRGPQTGFNS YPMNFSRADA IGSAKPVVQP MKGLDYFKNL IREHGTDNHE TNQYHSQTGI FNGRIDNNNK IHQQCIYFGT ANGCNMGDSC TYVHDRYRPN
501: FEAAAPRAKR MKFGRYERNG F
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)