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AT3G51120.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding; FUNCTIONS IN: DNA binding, zinc ion binding, nucleic acid binding; INVOLVED IN: histone modification, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Plus-3 domain, subgroup (InterPro:IPR018144), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), GYF (InterPro:IPR003169), SWIB/MDM2 domain (InterPro:IPR003121), Plus-3 (InterPro:IPR004343), SWIB domain (InterPro:IPR019835), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: nucleic acid binding;zinc ion binding;DNA binding (TAIR:AT2G16485.1); Has 2327 Blast hits to 1758 proteins in 258 species: Archae - 0; Bacteria - 308; Metazoa - 909; Fungi - 193; Plants - 493; Viruses - 18; Other Eukaryotes - 406 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41120ECeggNOG:KOG1081eggNOG:KOG1862eggNOG:KOG1946EMBL:AL132980EMBL:CP002686EnsemblPlants:AT3G51120
EnsemblPlants:AT3G51120.1entrez:824276Gene3D:1.10.245.10Gene3D:3.30.1490.40Gene3D:3.30.40.10GeneID:824276Genevisible:Q9SD34
GO:GO:0003677GO:GO:0005634GO:GO:0006352GO:GO:0008270GO:GO:0016570Gramene:AT3G51120.1hmmpanther:PTHR22884
hmmpanther:PTHR22884:SF374HOGENOM:HOG000177620InParanoid:Q9SD34InterPro:IPR000571InterPro:IPR001965InterPro:IPR003121InterPro:IPR003169
InterPro:IPR004343InterPro:IPR011011InterPro:IPR013083InterPro:IPR019786InterPro:IPR019787InterPro:IPR019835iPTMnet:Q9SD34
KEGG:ath:AT3G51120ncoils:CoilOMA:DQNITEDPaxDb:Q9SD34Pfam:PF00642Pfam:PF02201Pfam:PF02213
Pfam:PF03126Pfam:Q9SD34Pfscan:PS50016Pfscan:PS50103Pfscan:PS50829Pfscan:PS51360PIR:T45743
PRIDE:Q9SD34PRO:PR:Q9SD34PROSITE:PS01359PROSITE:PS50016PROSITE:PS50103PROSITE:PS50829PROSITE:PS51360
ProteinModelPortal:Q9SD34Proteomes:UP000006548RefSeq:NP_190681.6scanprosite:PS01359SMART:SM00151SMART:SM00249SMART:SM00444
SMART:SM00719SMR:Q9SD34STRING:3702.AT3G51120.1SUPFAM:0053761SUPFAM:SSF159042SUPFAM:SSF47592SUPFAM:SSF55277
SUPFAM:SSF57903SUPFAM:SSF90229TAIR:AT3G51120UniGene:At.858UniProt:Q9SD34
Coordinates (TAIR10) chr3:-:18986026..18991886
Molecular Weight (calculated) 142099.00 Da
IEP (calculated) 6.80
GRAVY (calculated) -0.61
Length 1292 amino acids
Sequence (TAIR10)
(BLAST)
0001: MENQQKQLQQ GVPELASLAG REESSVRGID LMRVDQCEEI GVNQVPALSV PASTVAGAVA VPMSNEQEVK VIDEAAPIKR KRGRPPRAQA NTPLHIRPPP
0101: PPPKKEDKEE DVCFICFDGG DLVLCDRRNC PKAYHPACIK RDEAFFRTTA KWNCGWHICG TCQKASSYMC YTCTFSVCKR CIKDADYVIV RGNMGLCGTC
0201: IKPIMLIENI AQGDNEAVKV DFDDKLSWEY LFKVYWLCLK EELSLTVDEL TRANNPWKEV PNTAPKVESQ NDHTNNRALD VAVNGTKRRR TSDSPTLPNK
0301: LDGKNPSNIL KKAPGDTSWA TKELLEFVSF MKNGDTSVLS QFDVQGLLLD YIKKKNLRDP LQKSQVLCDQ MLVKLFGKQR VGHFEMLKLL ESHVLIQEKP
0401: KGAKTTNGET THAVPSQIEE DSVHDPMVRD RRRKMRRKTD GRVQNENLDA YAAIDVHNIN LIYLRRKFLE SLLDDINKVD EKVVGTILRI KVSGSDQKLD
0501: IHRLVQVVGT SKAIASYQLG AKTTDVMLEI LNLDKREVIS IDQLSDQNIT EDECKRLRQS IKCGLNKRLT VVDILKTAAT LQAMRINEAL EAEILKLNHL
0601: RDRAKKLELL KSPEERQRLL QEVPEVHTDP SMDPSHALSE DAGLGTRKQD NHVKAQSKGP QNKGVNLNNV GNNVQKKYDA PILRSRNNVH ADKDDCSKVH
0701: NNSSNIQETG KDDEESEIWH YRDPTGKTQG PFSMVQLRRW KSSGHFPPYL RIWRAHENQD ESVLLTDALA GRFDKATTLP SSSSLPQELK PSPHDSGRTG
0801: ADVNCLQKNQ MPVNTSATSS SSSTVTAHSN DPKEKQVVAL VACSGKVEDG NSVRPQPQVS CPASISVVPG HVVTPDVRET PGTDQYNTVR ADGNHNTTKT
0901: LEDETNGGSV SINGSVHAPN LNQESHFLDF PSPTPKSSPE DLEAQAAETI QSLSSCVLVK GPSGVTWSTT TTSTTDAATT TSSVVVTGGQ LPQVIQQNTV
1001: VLAAPSVKPI ELAADHATAT QTSDNTQVAQ ASGWPAIVAD PDECDESVSD LLAEVEAMEQ NGLPSSPTST FHCDDDDDLK GPEKDFFNPV ARMSLTPETC
1101: RLDVSQTSIL DNVSAGKSSM LTEAKDNTPF SHCGTAGPEL LLFAPPPPPP TAISHDLTLT TTALRLGSET TVEAGTVERL PKSVLGVSSE PSPRSLSSHD
1201: SSSARGSTER SPRVSQPKRS SGHSRDRQWL NNGHNSSFNN SHNNRQWPYS NSHGYDHGSG SYAAHPPKGL KICKFYESGY CKRGASCSFW HP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)