AT3G51110.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.995 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: RNA processing; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), RNA-processing protein, HAT helix (InterPro:IPR003107), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: crooked neck protein, putative / cell cycle protein, putative (TAIR:AT5G41770.1); Has 4310 Blast hits to 1959 proteins in 231 species: Archae - 3; Bacteria - 10; Metazoa - 1644; Fungi - 1320; Plants - 755; Viruses - 0; Other Eukaryotes - 578 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:18983711..18984952 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50111.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.54 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.69 | ||||||||||||||||||||||||||||||||
| Length | 413 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMMIPRMVKN KTPAPVQITA EQVLKEARER EDSRILRPPK QKITDSDELA EYRLRRRKEF EDQIRGAKTN SQVWVRYADW EESQKDHDRA RSVWERALED 101: ESYRNHTLWL KYAEFEMRNK SVNHARNVWD RAVKILPRVD QFWYKYIHME EILGNIDGAR KIFERWMDWS PDQQAWLCFI KFELRYNEIE RSRSIYERFV 201: LCHPKASSFI RYAKFEMKNS QVSLARIVYE RAIEMLKDVE EEAEMIFVAF AEFEELCKEV ERARFLYKYA LDHIPKGRAE DLYKKFVAFE KQYGNKEGID 301: DAIVGRRKLQ YEGEVRKNPL NYDSWFDYIS LEETLGDKDR IREVYERAIA NVPLAEEKRY WQRYIYLWID YALFEEILAE DVERTRAVYR ECLNLIPSLQ 401: ILFCQDMVAR CTV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)