AT3G51050.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : FG-GAP repeat-containing protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FG-GAP repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell-matrix adhesion; LOCATED IN: integrin complex, integral to membrane, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 99 Blast hits to 94 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:18954023..18957698 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 77679.60 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.05 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||
| Length | 698 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRKRDLAILM LSGFAIFFTL QHEGDFAFKE AWFHLYDEYP VKYEADRLPP PIVADLNGDG KKEVLVATND AKIQVLEPHS RRVDEGFSEA RVLAEITLLP 101: DKIRVASGRR AVAMATGVID RYYKNGTPQK QVVVVVTSGW SVLCFDHNLK KLWETNLQED FPHNAHHREI AISISNYTLK HGDTGLVIVG GRMEMQPYNH 201: MDPFEELGMT AQNADQHRRS ATENQASEDS GAINLRHFSV YAFAGKTGLL RWSKKTDDVE AHTSDASQLI PQHNYKLDVH ALNSRHPGEF ECREFRESIL 301: SVMPHRWDRR EDTLLKLAHF RRHKRKTLKK QAGSKSTAYP FHKPEEHTPA GKDLSRKIPK LIGKAARYAG SAKPKKGMQY IPTITNYTKL WWVPNVVVAH 401: QKEGIEAIHL PTGRTLCKLS LLEGGLHADI NGDGVLDHVQ TVGGNVGERT VVSGSMEVLK PCWAVATSGV PIREQLFNVS ICHHSPFNFL HYGGDYSRHF 501: AQARDTSTLE IATPILIPRD DGHKHRKGSH GDVIFLTNRG EVTSYTPDVH GHDAVWQWQL QTEATWSNLP SPSGLTESGT VVPTLKPFSL RIHDNQPMIL 601: AGGDQAAVII SPGGSILASI ELPSQPTHAL ITDDFSNDGL TDVIVMTSNG VYGFVQTRQP GALFFSSLVG CLLVVMAVIF VTQHLNSIQG KPRPSSSF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)